Detailed information    

insolico Bioinformatically predicted

Overview


Name   eeP   Type   Regulator
Locus tag   AACH63_RS09265 Genome accession   NZ_AP027240
Coordinates   1852118..1853365 (-) Length   415 a.a.
NCBI ID   WP_096368981.1    Uniprot ID   -
Organism   Lactococcus formosensis strain L21-20     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1847118..1858365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH63_RS09255 - 1849264..1849896 (-) 633 Protein_1792 PolC-type DNA polymerase III N-terminal domain-containing protein -
  AACH63_RS09260 (LG21E20_18490) - 1850241..1852091 (-) 1851 WP_096368982.1 proline--tRNA ligase -
  AACH63_RS09265 (LG21E20_18500) eeP 1852118..1853365 (-) 1248 WP_096368981.1 RIP metalloprotease RseP Regulator
  AACH63_RS09270 (LG21E20_18510) - 1853542..1854336 (-) 795 WP_096368980.1 phosphatidate cytidylyltransferase -
  AACH63_RS09275 (LG21E20_18520) - 1854333..1855070 (-) 738 WP_096368979.1 isoprenyl transferase -
  AACH63_RS09280 (LG21E20_18530) yajC 1855269..1855601 (-) 333 WP_017369966.1 preprotein translocase subunit YajC -
  AACH63_RS09285 (LG21E20_18540) - 1855676..1856323 (-) 648 WP_096368978.1 DNA alkylation repair protein -
  AACH63_RS09290 (LG21E20_18550) rlmH 1856320..1856799 (-) 480 WP_096368977.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  AACH63_RS09295 (LG21E20_18560) htrA 1857103..1858320 (+) 1218 WP_017369969.1 trypsin-like peptidase domain-containing protein Regulator

Sequence


Protein


Download         Length: 415 a.a.        Molecular weight: 45089.51 Da        Isoelectric Point: 5.8072

>NTDB_id=100279 AACH63_RS09265 WP_096368981.1 1852118..1853365(-) (eeP) [Lactococcus formosensis strain L21-20]
MIQTLVTFIIVFGIIVVVHEYGHLFFAKRAGILVREFSIGMGPKIFAHQAKDGTFYSIRILPLGGYVRMAGWGDDTTEIK
KGTPASLMIVENQVVKINLSERVTLENSVPMLVTEYDFEEALFIEGEVFGETKRYSVDHDATIIEADGTELRIAPRDVQY
QSASVIGKILTNFAGPLNNFILGIIAFIIITFMQGGVPSNTNQIGQVQSGTPAYSAGLQSKDKIQAVNGEKTNNWEEVVQ
RIGANDGSEIKLDIERAGATKTLELKPEKIDGRYRIGITQTIKTGFLDKLTGGFTQAANATTLIFKALGNLIAQPSLDKL
GGPVAIYDLSGQAAREGLLSVIALLAMLSINLGIVNLIPIPVLDGGKIVLNIVEALRGKPLSQEKEGILTLVGLVFMVVL
MIAVTWNDILRAFIR

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=100279 AACH63_RS09265 WP_096368981.1 1852118..1853365(-) (eeP) [Lactococcus formosensis strain L21-20]
TTGATTCAAACATTGGTAACATTTATCATTGTCTTTGGTATTATTGTTGTTGTACATGAGTATGGTCATCTATTCTTTGC
TAAGCGCGCGGGGATTTTAGTCCGCGAGTTTTCCATTGGAATGGGCCCCAAAATTTTTGCACATCAAGCCAAAGATGGCA
CGTTTTATAGCATTCGTATACTTCCTCTTGGAGGTTATGTCCGCATGGCGGGCTGGGGCGATGATACAACGGAAATAAAA
AAAGGAACCCCGGCATCTTTGATGATTGTTGAAAATCAGGTGGTTAAAATTAATCTTTCTGAGCGGGTGACTTTGGAAAA
TAGTGTCCCCATGCTGGTCACTGAATACGATTTTGAAGAAGCACTTTTCATCGAAGGAGAAGTTTTTGGTGAAACAAAAC
GTTATTCAGTTGACCATGATGCAACAATTATCGAAGCGGATGGCACGGAACTTCGTATCGCTCCACGCGACGTACAATAT
CAAAGTGCCAGCGTTATCGGCAAGATTTTAACAAATTTCGCTGGTCCTTTAAATAACTTTATTTTAGGGATTATAGCTTT
TATTATAATCACTTTTATGCAAGGTGGTGTACCTTCTAATACAAATCAAATCGGACAAGTCCAATCTGGCACCCCTGCTT
ATTCGGCAGGTTTACAGTCAAAGGATAAAATCCAAGCAGTCAATGGTGAAAAAACGAATAACTGGGAAGAAGTTGTCCAA
AGGATCGGTGCAAATGATGGCAGTGAAATCAAGCTGGATATCGAACGTGCTGGTGCGACTAAGACACTGGAGCTCAAGCC
AGAAAAAATTGACGGAAGATACCGCATTGGTATCACTCAAACAATCAAAACAGGCTTTTTAGATAAGCTAACGGGAGGCT
TTACTCAGGCTGCTAACGCAACAACGTTGATATTTAAAGCTTTAGGTAACCTCATTGCACAGCCAAGTCTTGATAAACTT
GGTGGACCAGTGGCTATTTATGATTTAAGTGGGCAGGCAGCCCGAGAAGGTCTATTATCTGTTATCGCTTTACTTGCCAT
GCTCTCAATCAATCTGGGAATCGTAAATTTAATCCCAATCCCCGTCCTTGACGGAGGGAAAATTGTCCTCAATATTGTTG
AGGCCCTACGAGGCAAACCACTTTCACAAGAAAAAGAAGGAATTTTAACACTTGTTGGTCTTGTCTTTATGGTGGTCTTG
ATGATTGCGGTGACTTGGAATGATATCCTCCGAGCCTTTATTAGATAA

Domains


Predicted by InterproScan.

(7-400)

(204-256)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

56.086

100

0.566

  eeP Streptococcus thermophilus LMD-9

55.847

100

0.564


Multiple sequence alignment