Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ABEF86_RS13775 Genome accession   NZ_CP156780
Coordinates   2797461..2798180 (-) Length   239 a.a.
NCBI ID   WP_404798918.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7933     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2792461..2803180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF86_RS13755 (ABEF86_13755) aroB 2793065..2794144 (-) 1080 WP_347454500.1 3-dehydroquinate synthase -
  ABEF86_RS13760 (ABEF86_13760) aroK 2794173..2794709 (-) 537 WP_347454501.1 shikimate kinase AroK -
  ABEF86_RS13765 (ABEF86_13765) pilQ 2794746..2796917 (-) 2172 WP_347454502.1 type IV pilus secretin PilQ Machinery gene
  ABEF86_RS13770 (ABEF86_13770) pilP 2796934..2797461 (-) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF86_RS13775 (ABEF86_13775) comO 2797461..2798180 (-) 720 WP_404798918.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF86_RS13780 (ABEF86_13780) pilN 2798177..2798821 (-) 645 WP_347454503.1 PilN domain-containing protein Machinery gene
  ABEF86_RS13785 (ABEF86_13785) pilM 2798821..2799879 (-) 1059 WP_034585542.1 pilus assembly protein PilM Machinery gene
  ABEF86_RS13790 (ABEF86_13790) ponA 2800046..2802577 (+) 2532 WP_347454504.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27038.56 Da        Isoelectric Point: 4.6463

>NTDB_id=1002729 ABEF86_RS13775 WP_404798918.1 2797461..2798180(-) (comO) [Acinetobacter thermotolerans strain ANC 7933]
MSEQFEDLGQEPVVAPKNKMTVEKFFQQFNTLDPNNYGSWPIAVKITCWIFIVFVVMMLAYFGLIRGQIEAIAQANAQEQ
NLLNEFRDKDSKLRNLQQYQQQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNAGLKFKNIRLEPEVKQEFFIEQPI
SIEATGDYHSFGSFVSGIAGLSRIVTLHDFEITGTANKEKKTDIPVIDYVVKAKTYRYVGNTNTNSTADNTAANGQGAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=1002729 ABEF86_RS13775 WP_404798918.1 2797461..2798180(-) (comO) [Acinetobacter thermotolerans strain ANC 7933]
ATGAGCGAACAATTTGAAGATTTAGGCCAAGAACCTGTTGTTGCACCTAAAAATAAAATGACGGTGGAGAAGTTTTTTCA
GCAGTTTAATACCCTGGATCCAAATAATTATGGTAGTTGGCCGATCGCAGTTAAAATTACCTGCTGGATTTTTATTGTCT
TTGTGGTAATGATGCTGGCTTATTTTGGTTTGATCCGTGGTCAAATCGAAGCCATTGCACAAGCGAATGCTCAGGAGCAA
AACTTGCTCAATGAGTTCCGTGACAAGGATTCCAAGTTGCGTAACTTACAACAATATCAGCAACAATTGCAGGAAATGGA
AGCGCGTTTTAATCAACAGCTGGAGCAGTTGCCGAAAGAAACAGAGATTCCTGGGCTGGTTGAAGACATCAACCTAAGTG
GTGTCAATGCGGGCTTGAAGTTCAAGAATATCCGTCTTGAACCTGAAGTGAAGCAGGAATTCTTTATTGAACAACCGATT
TCGATTGAAGCAACGGGTGATTATCACTCCTTTGGTTCATTTGTTAGTGGTATTGCAGGTCTGTCACGTATCGTGACACT
GCATGACTTTGAAATTACCGGTACAGCAAATAAAGAAAAGAAAACTGATATTCCAGTGATTGATTATGTCGTGAAGGCAA
AAACTTATCGCTATGTAGGAAACACAAATACTAATAGTACAGCAGATAATACAGCTGCAAACGGTCAGGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

71.56

91.213

0.653
  pilO Acinetobacter baumannii D1279779

69.507

93.305

0.649

Multiple sequence alignment