Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABEF86_RS13265 Genome accession   NZ_CP156780
Coordinates   2695450..2696085 (+) Length   211 a.a.
NCBI ID   WP_347453547.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7933     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2690450..2701085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF86_RS13255 (ABEF86_13255) - 2692583..2693383 (-) 801 WP_034586950.1 NAD(P)H-binding protein -
  ABEF86_RS13260 (ABEF86_13260) recG 2693418..2695463 (+) 2046 WP_034586949.1 ATP-dependent DNA helicase RecG -
  ABEF86_RS13265 (ABEF86_13265) comF 2695450..2696085 (+) 636 WP_347453547.1 phosphoribosyltransferase family protein Machinery gene
  ABEF86_RS13270 (ABEF86_13270) - 2696088..2696489 (-) 402 WP_034586945.1 NUDIX domain-containing protein -
  ABEF86_RS13275 (ABEF86_13275) - 2696520..2697110 (-) 591 WP_034586942.1 TIGR00730 family Rossman fold protein -
  ABEF86_RS13280 (ABEF86_13280) - 2697264..2698277 (+) 1014 WP_034586940.1 CorA family divalent cation transporter -
  ABEF86_RS13285 (ABEF86_13285) tnpA 2698467..2698880 (-) 414 WP_347453558.1 IS200/IS605 family transposase -
  ABEF86_RS13290 (ABEF86_13290) - 2698901..2699958 (+) 1058 Protein_2569 RNA-guided endonuclease InsQ/TnpB family protein -
  ABEF86_RS13295 (ABEF86_13295) - 2699976..2700266 (-) 291 WP_034586937.1 STAS domain-containing protein -
  ABEF86_RS13300 (ABEF86_13300) - 2700279..2700914 (-) 636 WP_034586935.1 phospholipid-binding protein MlaC -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24255.47 Da        Isoelectric Point: 9.0883

>NTDB_id=1002725 ABEF86_RS13265 WP_347453547.1 2695450..2696085(+) (comF) [Acinetobacter thermotolerans strain ANC 7933]
MPMFKLIQQGKHWLGKLQPCQLCHHDYQAIHSVCQDCWQQLPWACQTVQRQEIPVQIACHYAYPMDRLIQLFKYEQKLYL
ENLLAGTLLSLNLPKVSAVVPMPISTEKLVQRGYNQSLLLAKHVARHLNVPVWQPITRLKQHSQKGLCRLERIEDIDTQF
QMNTSSKLRYRKVLIIDDVITTGSSIRALSQKLEELGCQQINAACVAGAKL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1002725 ABEF86_RS13265 WP_347453547.1 2695450..2696085(+) (comF) [Acinetobacter thermotolerans strain ANC 7933]
ATGCCTATGTTTAAGCTGATTCAACAAGGCAAGCATTGGCTAGGCAAGTTACAGCCCTGCCAGCTCTGTCATCATGATTA
TCAAGCGATACATTCAGTCTGTCAGGACTGCTGGCAGCAATTGCCCTGGGCATGTCAGACAGTACAACGACAGGAAATAC
CGGTACAGATTGCCTGCCATTATGCCTATCCGATGGACCGGCTAATTCAGCTTTTTAAATATGAACAGAAACTGTATTTA
GAAAATCTGCTGGCAGGTACCCTGCTCAGCTTAAACTTACCTAAAGTCAGTGCCGTGGTACCAATGCCGATCTCAACCGA
AAAGCTGGTACAGCGTGGTTATAACCAGTCATTACTACTCGCCAAGCATGTCGCCAGACATTTGAATGTGCCAGTGTGGC
AACCGATAACCCGACTTAAGCAGCATTCACAAAAAGGCTTATGCCGGCTGGAACGAATTGAAGATATTGATACGCAGTTC
CAGATGAATACTTCATCCAAACTGCGTTACCGCAAGGTACTGATTATTGATGATGTCATCACCACAGGCAGCTCAATCCG
AGCACTCAGCCAGAAGCTGGAAGAATTGGGCTGCCAACAGATTAATGCTGCTTGTGTGGCAGGTGCCAAACTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.522

98.104

0.555
  comF Acinetobacter baumannii D1279779

56.039

98.104

0.55

Multiple sequence alignment