Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ABEF86_RS12875 Genome accession   NZ_CP156780
Coordinates   2632345..2633208 (-) Length   287 a.a.
NCBI ID   WP_171077661.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7933     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2627345..2638208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF86_RS12845 (ABEF86_12845) - 2627387..2628463 (+) 1077 WP_034582278.1 PhoH family protein -
  ABEF86_RS12850 (ABEF86_12850) ybeY 2628495..2628977 (+) 483 WP_034582276.1 rRNA maturation RNase YbeY -
  ABEF86_RS12855 (ABEF86_12855) - 2629017..2630324 (-) 1308 WP_347456202.1 IS4 family transposase -
  ABEF86_RS12860 (ABEF86_12860) tnpA 2630507..2630920 (-) 414 WP_075167884.1 IS200/IS605 family transposase -
  ABEF86_RS12865 (ABEF86_12865) - 2630941..2631999 (+) 1059 WP_034586922.1 RNA-guided endonuclease TnpB family protein -
  ABEF86_RS12870 (ABEF86_12870) - 2632049..2632348 (+) 300 WP_034583764.1 antibiotic biosynthesis monooxygenase -
  ABEF86_RS12875 (ABEF86_12875) tonB2 2632345..2633208 (-) 864 WP_171077661.1 energy transducer TonB Machinery gene
  ABEF86_RS12880 (ABEF86_12880) - 2633477..2634166 (+) 690 WP_034583747.1 hypothetical protein -
  ABEF86_RS12885 (ABEF86_12885) - 2634329..2635042 (+) 714 WP_034583749.1 DUF3108 domain-containing protein -
  ABEF86_RS12890 (ABEF86_12890) - 2635133..2635708 (+) 576 WP_034583752.1 xanthine phosphoribosyltransferase -
  ABEF86_RS12895 (ABEF86_12895) - 2635929..2636585 (-) 657 WP_034583755.1 hypothetical protein -
  ABEF86_RS12900 (ABEF86_12900) - 2636667..2637863 (-) 1197 WP_347453557.1 CsgG/HfaB family protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32749.41 Da        Isoelectric Point: 8.4114

>NTDB_id=1002723 ABEF86_RS12875 WP_171077661.1 2632345..2633208(-) (tonB2) [Acinetobacter thermotolerans strain ANC 7933]
MPLVKSWWKDPIFSGAVAIAAILHIMILLLQFGMPQERDTSSKEIAVSLRISNDKIEHADFLAQTDQQGSGQFREAHRMS
SDAPMPIPADEAAVGEAQQQSEDMLRQKQELSFEEKVLMTALSWQKQAEENQRKKRQEELNSQFQAKAAMVASLEAQYMQ
RQQNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNRFYPESARLQRLAGDVRLMVILNQNGGIRAIRLLESSGHA
VLDEAAKMSLRKAAPFGVFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 864 bp        

>NTDB_id=1002723 ABEF86_RS12875 WP_171077661.1 2632345..2633208(-) (tonB2) [Acinetobacter thermotolerans strain ANC 7933]
ATGCCTTTGGTTAAGTCATGGTGGAAAGATCCGATTTTCAGTGGAGCAGTAGCCATTGCTGCCATCCTGCATATCATGAT
TTTGCTGCTGCAGTTTGGTATGCCTCAGGAGCGGGATACTTCAAGCAAGGAAATTGCGGTCAGCCTACGCATCAGCAATG
ACAAAATAGAGCATGCCGATTTCCTCGCGCAAACCGATCAGCAAGGTTCTGGCCAGTTCCGAGAAGCCCATCGAATGTCG
AGTGATGCCCCGATGCCTATACCAGCCGATGAAGCAGCAGTGGGAGAAGCACAGCAGCAAAGCGAAGATATGCTGAGGCA
GAAGCAGGAACTCAGTTTTGAAGAAAAAGTGCTGATGACGGCATTGAGCTGGCAGAAACAGGCGGAAGAAAATCAGCGTA
AAAAACGTCAGGAAGAACTGAATAGCCAGTTCCAGGCCAAAGCAGCCATGGTGGCAAGTCTGGAAGCGCAATATATGCAA
CGCCAGCAAAATTTTAGCCGTCAGCAAAAGATTAAAACTGTGGATGGGATTCAGGCCAAGCAGGACGTCTCTGCAGCCTA
TCTGGAAAAGTTCCGTCAGAAGGTAGAATTCTATGGCAACCGTTTTTATCCGGAATCTGCCCGTCTGCAGCGCCTAGCGG
GTGATGTGCGTTTGATGGTGATCCTGAACCAGAACGGCGGGATTCGTGCGATCCGTTTGCTAGAGTCTTCAGGCCATGCG
GTGCTGGATGAAGCGGCGAAAATGTCACTGCGTAAAGCAGCGCCGTTTGGCGTGTTTGATGCCAAAATGAAAGATATTTC
CGAACTGCGGATTATTCGGACGTGGCGCTTTGATCCTGCTGAGGCAGAGTTTGAGGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(201-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.143

97.561

0.704

Multiple sequence alignment