Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABEF85_RS13030 Genome accession   NZ_CP156776
Coordinates   2677440..2678075 (+) Length   211 a.a.
NCBI ID   WP_347453547.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7955     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2675408..2699448 2677440..2678075 within 0


Gene organization within MGE regions


Location: 2675408..2699448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF85_RS13025 (ABEF85_13025) recG 2675408..2677453 (+) 2046 WP_034586949.1 ATP-dependent DNA helicase RecG -
  ABEF85_RS13030 (ABEF85_13030) comF 2677440..2678075 (+) 636 WP_347453547.1 phosphoribosyltransferase family protein Machinery gene
  ABEF85_RS13035 (ABEF85_13035) - 2678078..2678479 (-) 402 WP_034586945.1 NUDIX domain-containing protein -
  ABEF85_RS13040 (ABEF85_13040) - 2678510..2679100 (-) 591 WP_034586942.1 TIGR00730 family Rossman fold protein -
  ABEF85_RS13045 (ABEF85_13045) - 2679254..2680267 (+) 1014 WP_034586940.1 CorA family divalent cation transporter -
  ABEF85_RS13050 (ABEF85_13050) - 2680371..2680661 (-) 291 WP_034586937.1 STAS domain-containing protein -
  ABEF85_RS13055 (ABEF85_13055) - 2680674..2681309 (-) 636 WP_034586935.1 phospholipid-binding protein MlaC -
  ABEF85_RS13060 (ABEF85_13060) - 2681328..2682005 (-) 678 WP_034586933.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ABEF85_RS13065 (ABEF85_13065) mlaE 2682005..2682784 (-) 780 WP_034586930.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ABEF85_RS13070 (ABEF85_13070) - 2682781..2683599 (-) 819 WP_034586928.1 ABC transporter ATP-binding protein -
  ABEF85_RS13075 (ABEF85_13075) - 2683707..2684765 (-) 1059 WP_034586922.1 RNA-guided endonuclease TnpB family protein -
  ABEF85_RS13080 (ABEF85_13080) tnpA 2684786..2685199 (+) 414 WP_075167884.1 IS200/IS605 family transposase -
  ABEF85_RS13085 (ABEF85_13085) - 2685536..2687284 (-) 1749 WP_034582215.1 DEAD/DEAH box helicase -
  ABEF85_RS13090 (ABEF85_13090) - 2687711..2688541 (-) 831 WP_034582213.1 inositol monophosphatase family protein -
  ABEF85_RS13095 (ABEF85_13095) dxs 2688662..2690566 (-) 1905 WP_347453546.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ABEF85_RS13100 (ABEF85_13100) ribA 2690878..2691480 (+) 603 WP_034582209.1 GTP cyclohydrolase II -
  ABEF85_RS13105 (ABEF85_13105) hemN 2691605..2692978 (-) 1374 WP_347463900.1 oxygen-independent coproporphyrinogen III oxidase -
  ABEF85_RS13110 (ABEF85_13110) hemF 2693216..2694166 (+) 951 WP_347453545.1 oxygen-dependent coproporphyrinogen oxidase -
  ABEF85_RS13115 (ABEF85_13115) - 2694406..2694612 (+) 207 WP_034582199.1 hypothetical protein -
  ABEF85_RS13120 (ABEF85_13120) aroE 2694716..2695504 (+) 789 WP_034582197.1 shikimate dehydrogenase -
  ABEF85_RS13125 (ABEF85_13125) - 2695895..2697718 (+) 1824 WP_347453544.1 acyl-CoA dehydrogenase C-terminal domain-containing protein -
  ABEF85_RS13130 (ABEF85_13130) - 2698067..2698276 (+) 210 WP_034582192.1 cold-shock protein -
  ABEF85_RS13135 (ABEF85_13135) - 2698486..2699448 (-) 963 WP_347463903.1 IS30-like element IS18 family transposase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24255.47 Da        Isoelectric Point: 9.0883

>NTDB_id=1002641 ABEF85_RS13030 WP_347453547.1 2677440..2678075(+) (comF) [Acinetobacter thermotolerans strain ANC 7955]
MPMFKLIQQGKHWLGKLQPCQLCHHDYQAIHSVCQDCWQQLPWACQTVQRQEIPVQIACHYAYPMDRLIQLFKYEQKLYL
ENLLAGTLLSLNLPKVSAVVPMPISTEKLVQRGYNQSLLLAKHVARHLNVPVWQPITRLKQHSQKGLCRLERIEDIDTQF
QMNTSSKLRYRKVLIIDDVITTGSSIRALSQKLEELGCQQINAACVAGAKL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1002641 ABEF85_RS13030 WP_347453547.1 2677440..2678075(+) (comF) [Acinetobacter thermotolerans strain ANC 7955]
ATGCCTATGTTTAAGCTGATTCAACAAGGCAAGCATTGGCTAGGCAAGTTACAGCCCTGCCAGCTCTGTCATCATGATTA
TCAAGCGATACATTCAGTCTGTCAGGACTGCTGGCAGCAATTGCCCTGGGCATGTCAGACAGTACAACGACAGGAAATAC
CGGTACAGATTGCCTGCCATTATGCCTATCCGATGGACCGGCTAATTCAGCTTTTTAAATATGAACAGAAACTGTATTTA
GAAAATCTGCTGGCAGGTACCCTGCTCAGCTTAAACTTACCTAAAGTCAGTGCCGTGGTACCAATGCCGATCTCGACCGA
AAAGCTGGTACAGCGTGGTTATAACCAGTCATTACTACTCGCCAAGCATGTCGCCAGACATTTGAATGTGCCAGTGTGGC
AACCGATAACCCGACTTAAGCAGCATTCACAAAAAGGCTTATGCCGGCTGGAACGAATTGAAGATATTGATACGCAGTTC
CAGATGAATACTTCATCCAAACTGCGTTACCGCAAGGTACTGATTATTGATGATGTCATCACCACAGGCAGCTCAATCCG
AGCACTCAGCCAGAAGCTGGAAGAATTGGGCTGCCAACAGATTAATGCTGCTTGTGTGGCAGGTGCCAAACTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.522

98.104

0.555
  comF Acinetobacter baumannii D1279779

56.039

98.104

0.55

Multiple sequence alignment