Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   EL215_RS05535 Genome accession   NZ_LR134481
Coordinates   1084268..1084879 (+) Length   203 a.a.
NCBI ID   WP_049356462.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain NCTC10665     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1079268..1089879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL215_RS05505 - 1079774..1080241 (+) 468 WP_126470747.1 hypothetical protein -
  EL215_RS05510 (NCTC10665_01093) - 1080517..1081785 (+) 1269 WP_126470749.1 NRAMP family divalent metal transporter -
  EL215_RS05515 (NCTC10665_01094) nudB 1081887..1082345 (+) 459 WP_126470751.1 dihydroneopterin triphosphate diphosphatase -
  EL215_RS05520 (NCTC10665_01095) - 1082393..1083133 (+) 741 WP_005697071.1 YebC/PmpR family DNA-binding transcriptional regulator -
  EL215_RS05525 (NCTC10665_01096) - 1083151..1083585 (+) 435 WP_126470753.1 hypothetical protein -
  EL215_RS05530 (NCTC10665_01097) ruvC 1083637..1084209 (+) 573 WP_049356460.1 crossover junction endodeoxyribonuclease RuvC -
  EL215_RS05535 (NCTC10665_01098) ruvA 1084268..1084879 (+) 612 WP_049356462.1 Holliday junction branch migration protein RuvA Machinery gene
  EL215_RS05540 (NCTC10665_01099) ruvB 1084893..1085900 (+) 1008 WP_049356464.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  EL215_RS05545 (NCTC10665_01100) - 1085956..1086267 (-) 312 WP_049356465.1 DUF5339 domain-containing protein -
  EL215_RS05550 (NCTC10665_01101) - 1086712..1088277 (+) 1566 WP_126470755.1 cytochrome ubiquinol oxidase subunit I -
  EL215_RS05555 (NCTC10665_01102) cydB 1088292..1089431 (+) 1140 WP_126470757.1 cytochrome d ubiquinol oxidase subunit II -
  EL215_RS05560 (NCTC10665_01103) - 1089443..1089541 (+) 99 WP_126470759.1 cytochrome bd oxidase small subunit, CydX/CbdX family -
  EL215_RS05565 (NCTC10665_01104) ybgE 1089544..1089831 (+) 288 WP_049356478.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22468.21 Da        Isoelectric Point: 6.7418

>NTDB_id=1002570 EL215_RS05535 WP_049356462.1 1084268..1084879(+) (ruvA) [Haemophilus parainfluenzae strain NCTC10665]
MIGRLKGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLVKIPGVGKKTAERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQAESSA
DEAVAALVALGYKPSDAEKMVKKVAKADLSSEQLIREALKAAL

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1002570 EL215_RS05535 WP_049356462.1 1084268..1084879(+) (ruvA) [Haemophilus parainfluenzae strain NCTC10665]
ATGATCGGTCGTTTAAAAGGCATCCTATTAGAAAAACAACCTCCTGAAATTTTGCTTGATGTACAAGGCGTCGGTTACGA
ATTATTGTTACCAATGACCAGTTTTTATGACTTACCTGAAATCGGGCAAGAAACTACTTTATTTACCCATCTTGTTGTGC
GTGAAGATGCTCATCTTCTTTTTGGATTTGCCCAAAAAACTGACCGCACTTTATTCCGTGAATTAATTAAAACCAATGGT
GTTGGCCCTAAATTGGCACTTGCGATTTTATCTGCAATGTCAGTAGAGCAGTTTGCTTACGCTATTGAGCGAGAAGAACT
GTCAAAATTAGTTAAAATTCCTGGTGTGGGCAAGAAAACGGCTGAACGTTTATTAGTAGAGTTAAAAGGGAAGTTTAAGG
ATGTTCGTCAAAGTGATTTCTTTGTGGAGAGCAAACATATTCCGTCAACGTCAGAATTGCGCCAGGCTGAGAGCTCAGCT
GATGAAGCGGTTGCTGCATTGGTTGCATTAGGCTATAAACCAAGCGATGCTGAAAAAATGGTGAAAAAAGTCGCTAAAGC
GGATTTAAGCAGTGAGCAATTAATTCGTGAAGCCTTAAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(160-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.441

100

0.389