Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | EL215_RS05540 | Genome accession | NZ_LR134481 |
| Coordinates | 1084893..1085900 (+) | Length | 335 a.a. |
| NCBI ID | WP_049356464.1 | Uniprot ID | - |
| Organism | Haemophilus parainfluenzae strain NCTC10665 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1079893..1090900
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL215_RS05510 (NCTC10665_01093) | - | 1080517..1081785 (+) | 1269 | WP_126470749.1 | NRAMP family divalent metal transporter | - |
| EL215_RS05515 (NCTC10665_01094) | nudB | 1081887..1082345 (+) | 459 | WP_126470751.1 | dihydroneopterin triphosphate diphosphatase | - |
| EL215_RS05520 (NCTC10665_01095) | - | 1082393..1083133 (+) | 741 | WP_005697071.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| EL215_RS05525 (NCTC10665_01096) | - | 1083151..1083585 (+) | 435 | WP_126470753.1 | hypothetical protein | - |
| EL215_RS05530 (NCTC10665_01097) | ruvC | 1083637..1084209 (+) | 573 | WP_049356460.1 | crossover junction endodeoxyribonuclease RuvC | - |
| EL215_RS05535 (NCTC10665_01098) | ruvA | 1084268..1084879 (+) | 612 | WP_049356462.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| EL215_RS05540 (NCTC10665_01099) | ruvB | 1084893..1085900 (+) | 1008 | WP_049356464.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| EL215_RS05545 (NCTC10665_01100) | - | 1085956..1086267 (-) | 312 | WP_049356465.1 | DUF5339 domain-containing protein | - |
| EL215_RS05550 (NCTC10665_01101) | - | 1086712..1088277 (+) | 1566 | WP_126470755.1 | cytochrome ubiquinol oxidase subunit I | - |
| EL215_RS05555 (NCTC10665_01102) | cydB | 1088292..1089431 (+) | 1140 | WP_126470757.1 | cytochrome d ubiquinol oxidase subunit II | - |
| EL215_RS05560 (NCTC10665_01103) | - | 1089443..1089541 (+) | 99 | WP_126470759.1 | cytochrome bd oxidase small subunit, CydX/CbdX family | - |
| EL215_RS05565 (NCTC10665_01104) | ybgE | 1089544..1089831 (+) | 288 | WP_049356478.1 | cyd operon protein YbgE | - |
| EL215_RS05570 (NCTC10665_01105) | ybgC | 1089903..1090331 (+) | 429 | WP_232013299.1 | tol-pal system-associated acyl-CoA thioesterase | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 37178.65 Da Isoelectric Point: 4.7914
>NTDB_id=1002571 EL215_RS05540 WP_049356464.1 1084893..1085900(+) (ruvB) [Haemophilus parainfluenzae strain NCTC10665]
MIEADRIISSQAKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNNG
IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLQKPLE
MIEADRIISSQAKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNNG
IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLQKPLE
Nucleotide
Download Length: 1008 bp
>NTDB_id=1002571 EL215_RS05540 WP_049356464.1 1084893..1085900(+) (ruvB) [Haemophilus parainfluenzae strain NCTC10665]
ATGATTGAAGCAGATAGAATTATTAGCAGTCAGGCAAAGATGGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAGCT
TTTAGCTGACTATGTGGGACAGCCACAAGTGCGAGAGCAGATGGATATTTTTATTAAGGCGGCAAAATTGCGTCAAGATG
CCTTAGATCATCTTTTGATCTTCGGTCCTCCTGGCTTAGGAAAAACGACGCTAGCTAATATTGTGGCGAATGAAATGGGC
GTGAATATTCGTACCACATCAGGTCCTGTTCTTGAAAAAGCTGGAGATTTAGCGGCAATGCTGACAAATCTTGAACCCCA
TGATGTGTTGTTTATTGATGAAATTCACCGTCTTTCCCCTGCGATTGAAGAAGTGCTTTATCCAGCAATGGAAGATTATC
AGCTGGATATTATGATCGGTGAAGGCCCTGCTGCACGCTCAATTAAATTGGATTTGCCACCTTTCACATTAATTGGTGCA
ACAACTCGAGCGGGTTCGTTAACTTCACCATTACGCGATCGTTTTGGTATTGTTCAGCGTTTAGAATTTTATTCAGTTGA
AGATTTAACTTCTATTGTGACAAGAAGTGCCTCTTGCTTAAATCTAGAATTAGAAGATAAAGCCGCTTTTGAAGTGGCGC
GTCGTTCACGTGGTACTCCTCGTATTGCAAACCGTTTATTGCGTCGAGTTCGAGATTTTGCTGATGTGCGTAATAATGGC
ATTATTTCGGCAGACATTGCGAAACAAGCGCTTTCAATGTTAGATGTAGATGATGCGGGCTTTGATTATTTAGATAGAAA
ATTACTTACCGCTGTAATTGAACGTTTTGATGGTGGGCCAGTTGGGTTAGATAACTTGGCAGCAGCAATAGGTGAAGAGC
GAGACACTATCGAGGATGTTTTAGAACCTTACTTGATTCAACAGGGATTCTTACAGCGTACGCCTCGAGGCCGAATTGCG
ACTTCCTTAACTTATCGACACTTCGGACTTCAGAAACCCTTAGAATAA
ATGATTGAAGCAGATAGAATTATTAGCAGTCAGGCAAAGATGGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAGCT
TTTAGCTGACTATGTGGGACAGCCACAAGTGCGAGAGCAGATGGATATTTTTATTAAGGCGGCAAAATTGCGTCAAGATG
CCTTAGATCATCTTTTGATCTTCGGTCCTCCTGGCTTAGGAAAAACGACGCTAGCTAATATTGTGGCGAATGAAATGGGC
GTGAATATTCGTACCACATCAGGTCCTGTTCTTGAAAAAGCTGGAGATTTAGCGGCAATGCTGACAAATCTTGAACCCCA
TGATGTGTTGTTTATTGATGAAATTCACCGTCTTTCCCCTGCGATTGAAGAAGTGCTTTATCCAGCAATGGAAGATTATC
AGCTGGATATTATGATCGGTGAAGGCCCTGCTGCACGCTCAATTAAATTGGATTTGCCACCTTTCACATTAATTGGTGCA
ACAACTCGAGCGGGTTCGTTAACTTCACCATTACGCGATCGTTTTGGTATTGTTCAGCGTTTAGAATTTTATTCAGTTGA
AGATTTAACTTCTATTGTGACAAGAAGTGCCTCTTGCTTAAATCTAGAATTAGAAGATAAAGCCGCTTTTGAAGTGGCGC
GTCGTTCACGTGGTACTCCTCGTATTGCAAACCGTTTATTGCGTCGAGTTCGAGATTTTGCTGATGTGCGTAATAATGGC
ATTATTTCGGCAGACATTGCGAAACAAGCGCTTTCAATGTTAGATGTAGATGATGCGGGCTTTGATTATTTAGATAGAAA
ATTACTTACCGCTGTAATTGAACGTTTTGATGGTGGGCCAGTTGGGTTAGATAACTTGGCAGCAGCAATAGGTGAAGAGC
GAGACACTATCGAGGATGTTTTAGAACCTTACTTGATTCAACAGGGATTCTTACAGCGTACGCCTCGAGGCCGAATTGCG
ACTTCCTTAACTTATCGACACTTCGGACTTCAGAAACCCTTAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
63.222 |
98.209 |
0.621 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.896 |
97.313 |
0.573 |
| ruvB | Streptococcus pneumoniae R6 |
58.896 |
97.313 |
0.573 |
| ruvB | Streptococcus pneumoniae D39 |
58.896 |
97.313 |
0.573 |
| ruvB | Helicobacter pylori 26695 |
55.921 |
90.746 |
0.507 |
| ruvB | Synechocystis sp. PCC 6803 |
54.167 |
93.134 |
0.504 |