Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABEF83_RS05815 | Genome accession | NZ_CP156768 |
| Coordinates | 1209812..1210162 (+) | Length | 116 a.a. |
| NCBI ID | WP_347454970.1 | Uniprot ID | - |
| Organism | Acinetobacter thermotolerans strain ANC 7974 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1204812..1215162
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABEF83_RS05785 (ABEF83_05785) | kdsB | 1205586..1206347 (+) | 762 | WP_034587642.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ABEF83_RS05790 (ABEF83_05790) | - | 1206362..1207348 (+) | 987 | WP_034587644.1 | DNA polymerase III subunit delta' | - |
| ABEF83_RS05795 (ABEF83_05795) | - | 1207364..1207705 (+) | 342 | WP_034587646.1 | PilZ domain-containing protein | - |
| ABEF83_RS05800 (ABEF83_05800) | - | 1207734..1208507 (+) | 774 | WP_347454887.1 | TatD family hydrolase | - |
| ABEF83_RS05805 (ABEF83_05805) | - | 1208551..1209165 (+) | 615 | WP_034587650.1 | TetR/AcrR family transcriptional regulator | - |
| ABEF83_RS05810 (ABEF83_05810) | - | 1209175..1209735 (+) | 561 | WP_034587652.1 | Tfp pilus assembly protein FimT/FimU | - |
| ABEF83_RS05815 (ABEF83_05815) | xcpV | 1209812..1210162 (+) | 351 | WP_347454970.1 | type II secretion system protein | Machinery gene |
| ABEF83_RS05820 (ABEF83_05820) | xcpW | 1210159..1210791 (+) | 633 | WP_347454888.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABEF83_RS05825 (ABEF83_05825) | gspK | 1210801..1211748 (+) | 948 | WP_347454889.1 | type II secretion system minor pseudopilin GspK | - |
| ABEF83_RS05830 (ABEF83_05830) | - | 1211894..1212490 (+) | 597 | WP_347454890.1 | 6-carboxytetrahydropterin synthase | - |
| ABEF83_RS05835 (ABEF83_05835) | ung | 1212536..1213252 (+) | 717 | WP_347454891.1 | uracil-DNA glycosylase | - |
| ABEF83_RS05840 (ABEF83_05840) | - | 1213249..1214373 (+) | 1125 | WP_034587659.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABEF83_RS05845 (ABEF83_05845) | tadA | 1214377..1214898 (+) | 522 | WP_347452842.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 116 a.a. Molecular weight: 12736.41 Da Isoelectric Point: 7.2026
>NTDB_id=1002547 ABEF83_RS05815 WP_347454970.1 1209812..1210162(+) (xcpV) [Acinetobacter thermotolerans strain ANC 7974]
MVALAIFATAAMALTKVAMQYTQSTAHAILRTKAQFVALNEAAQMEINQEWLTGTSSRRTIQQGETWQIDKKSEPTISPN
VQRVDIQVGIVNADTGQVESGVSSLVFFNHRANQTQ
MVALAIFATAAMALTKVAMQYTQSTAHAILRTKAQFVALNEAAQMEINQEWLTGTSSRRTIQQGETWQIDKKSEPTISPN
VQRVDIQVGIVNADTGQVESGVSSLVFFNHRANQTQ
Nucleotide
Download Length: 351 bp
>NTDB_id=1002547 ABEF83_RS05815 WP_347454970.1 1209812..1210162(+) (xcpV) [Acinetobacter thermotolerans strain ANC 7974]
ATGGTGGCACTTGCGATTTTTGCCACTGCAGCGATGGCATTGACCAAGGTCGCGATGCAATATACCCAATCTACGGCACA
TGCCATTTTGCGTACCAAAGCCCAGTTTGTGGCTCTAAATGAAGCTGCACAAATGGAGATTAATCAGGAATGGTTGACTG
GAACTTCATCTCGACGAACTATACAGCAGGGTGAAACCTGGCAGATTGATAAAAAATCTGAACCGACGATTAGTCCCAAT
GTGCAACGTGTGGATATTCAGGTCGGCATCGTCAATGCAGATACCGGGCAGGTGGAATCAGGTGTCAGTAGTCTGGTGTT
CTTTAATCATCGGGCGAATCAGACACAATGA
ATGGTGGCACTTGCGATTTTTGCCACTGCAGCGATGGCATTGACCAAGGTCGCGATGCAATATACCCAATCTACGGCACA
TGCCATTTTGCGTACCAAAGCCCAGTTTGTGGCTCTAAATGAAGCTGCACAAATGGAGATTAATCAGGAATGGTTGACTG
GAACTTCATCTCGACGAACTATACAGCAGGGTGAAACCTGGCAGATTGATAAAAAATCTGAACCGACGATTAGTCCCAAT
GTGCAACGTGTGGATATTCAGGTCGGCATCGTCAATGCAGATACCGGGCAGGTGGAATCAGGTGTCAGTAGTCTGGTGTT
CTTTAATCATCGGGCGAATCAGACACAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
68.182 |
94.828 |
0.647 |