Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABFT82_RS19355 Genome accession   NZ_CP156749
Coordinates   3928288..3928695 (+) Length   135 a.a.
NCBI ID   WP_347505714.1    Uniprot ID   -
Organism   Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3923288..3933695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT82_RS19325 (ABFT82_19325) - 3923510..3924520 (-) 1011 WP_090380385.1 aspartate carbamoyltransferase catalytic subunit -
  ABFT82_RS19330 (ABFT82_19330) pyrR 3924531..3925037 (-) 507 WP_090380387.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  ABFT82_RS19335 (ABFT82_19335) ruvX 3925069..3925512 (-) 444 WP_090380391.1 Holliday junction resolvase RuvX -
  ABFT82_RS19340 (ABFT82_19340) - 3925512..3926081 (-) 570 WP_090380395.1 YqgE/AlgH family protein -
  ABFT82_RS19345 (ABFT82_19345) - 3926132..3927028 (-) 897 WP_347505713.1 energy transducer TonB -
  ABFT82_RS19350 (ABFT82_19350) gshB 3927085..3928047 (-) 963 WP_090380401.1 glutathione synthase -
  ABFT82_RS19355 (ABFT82_19355) pilG 3928288..3928695 (+) 408 WP_347505714.1 twitching motility response regulator PilG Regulator
  ABFT82_RS19360 (ABFT82_19360) pilH 3928743..3929108 (+) 366 WP_090380407.1 twitching motility response regulator PilH -
  ABFT82_RS19365 (ABFT82_19365) - 3929153..3929689 (+) 537 WP_347505715.1 chemotaxis protein CheW -
  ABFT82_RS19370 (ABFT82_19370) - 3929774..3931819 (+) 2046 WP_347505716.1 methyl-accepting chemotaxis protein -
  ABFT82_RS19375 (ABFT82_19375) - 3931888..3932745 (+) 858 WP_269380339.1 protein-glutamate O-methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14853.28 Da        Isoelectric Point: 6.7128

>NTDB_id=1002527 ABFT82_RS19355 WP_347505714.1 3928288..3928695(+) (pilG) [Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass]
MEQHSEGLRVMVIDDSKTIRRTAETLLKKVGCEVITAVDGFDALAKIADTHPSIIFIDIMMPRLDGYQTCVLIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKAHVPDFVPVEQAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=1002527 ABFT82_RS19355 WP_347505714.1 3928288..3928695(+) (pilG) [Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass]
ATGGAACAGCATTCCGAGGGTTTGAGGGTGATGGTGATCGACGATTCGAAAACGATTCGTCGTACCGCGGAAACCCTGCT
GAAAAAGGTGGGCTGCGAGGTAATTACTGCAGTTGACGGCTTCGATGCTTTGGCAAAGATCGCCGATACCCATCCGAGCA
TCATCTTTATCGACATTATGATGCCGCGGCTCGATGGCTATCAGACCTGTGTCTTGATCAAGAACAACAGCGCTTTCAAA
TCCACTCCGGTGATCATGCTGTCTTCCAAAGACGGTCTGTTCGACAAAGCCAAAGGGCGCATTGTCGGTTCCGATCAATA
CCTGACCAAACCCTTCAGTAAAGAAGAGCTGCTCGGTGCGATCAAAGCCCATGTGCCTGACTTTGTACCGGTGGAACAAG
CGTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.4

92.593

0.689
  vicR Streptococcus mutans UA159

41.27

93.333

0.385

Multiple sequence alignment