Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NJ284_RS05675 Genome accession   NZ_CP156748
Coordinates   1272235..1273689 (-) Length   484 a.a.
NCBI ID   WP_170922314.1    Uniprot ID   -
Organism   Xanthomonas citri pv. anacardii strain CCRMTAQ13     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1267235..1278689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJ284_RS05655 (NJ284_05655) pilC 1267453..1268709 (-) 1257 WP_007973903.1 type II secretion system F family protein Machinery gene
  NJ284_RS05660 (NJ284_05660) pilE 1269036..1269476 (+) 441 WP_005934296.1 pilin Machinery gene
  NJ284_RS05665 (NJ284_05665) pilE 1269552..1269986 (+) 435 WP_007973901.1 pilin Machinery gene
  NJ284_RS05670 (NJ284_05670) pilB 1270049..1271785 (+) 1737 WP_103100888.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NJ284_RS05675 (NJ284_05675) pilR 1272235..1273689 (-) 1455 WP_170922314.1 sigma-54 dependent transcriptional regulator Regulator
  NJ284_RS05680 (NJ284_05680) - 1273959..1275572 (-) 1614 WP_103092925.1 HAMP domain-containing sensor histidine kinase -
  NJ284_RS05685 (NJ284_05685) sucC 1275804..1276973 (+) 1170 WP_103092926.1 ADP-forming succinate--CoA ligase subunit beta -
  NJ284_RS05690 (NJ284_05690) sucD 1276998..1277873 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  NJ284_RS05695 (NJ284_05695) - 1278002..1278246 (+) 245 Protein_1106 hypothetical protein -
  NJ284_RS05700 (NJ284_05700) - 1278301..1278672 (+) 372 WP_042675483.1 endonuclease domain-containing protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52479.25 Da        Isoelectric Point: 6.9090

>NTDB_id=1002491 NJ284_RS05675 WP_170922314.1 1272235..1273689(-) (pilR) [Xanthomonas citri pv. anacardii strain CCRMTAQ13]
MGHHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1002491 NJ284_RS05675 WP_170922314.1 1272235..1273689(-) (pilR) [Xanthomonas citri pv. anacardii strain CCRMTAQ13]
TTGGGCCACCACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCTCCACCGGAACAGGCCAGCCGC
CTGCTCGGGGACTCTAGTGCCATGGAAAGCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGTGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TACCGGTCAACTGTGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCCCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTATCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTACGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCACGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGACGCATTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGCGGCCACCGTTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment