Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   CV024_RS11830 Genome accession   NZ_CP156745
Coordinates   2534734..2536095 (-) Length   453 a.a.
NCBI ID   WP_100267462.1    Uniprot ID   -
Organism   Vibrio fluvialis strain QY27     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2529734..2541095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV024_RS11795 (CV024_11795) moaE 2530438..2530893 (-) 456 WP_061056720.1 molybdopterin synthase catalytic subunit MoaE -
  CV024_RS11800 (CV024_11800) moaD 2530895..2531140 (-) 246 WP_061056721.1 molybdopterin synthase sulfur carrier subunit -
  CV024_RS11805 (CV024_11805) moaC 2531137..2531616 (-) 480 WP_020327924.1 cyclic pyranopterin monophosphate synthase MoaC -
  CV024_RS11810 (CV024_11810) moaB 2531626..2532138 (-) 513 WP_020327925.1 molybdenum cofactor biosynthesis protein B -
  CV024_RS11815 (CV024_11815) moaA 2532210..2533199 (-) 990 WP_038127045.1 GTP 3',8-cyclase MoaA -
  CV024_RS11820 (CV024_11820) - 2533510..2534400 (+) 891 WP_061056722.1 YvcK family protein -
  CV024_RS11825 (CV024_11825) luxU 2534389..2534727 (-) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  CV024_RS11830 (CV024_11830) luxO 2534734..2536095 (-) 1362 WP_100267462.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  CV024_RS11835 (CV024_11835) uvrB 2536382..2538412 (-) 2031 WP_061056724.1 excinuclease ABC subunit UvrB -
  CV024_RS11845 (CV024_11845) - 2539253..2540482 (+) 1230 WP_100267400.1 integrase domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50380.59 Da        Isoelectric Point: 5.5371

>NTDB_id=1002465 CV024_RS11830 WP_100267462.1 2534734..2536095(-) (luxO) [Vibrio fluvialis strain QY27]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPEVVERFKEYEWPGNVRQLQNVLRNVVVLNEGREINLNMLPPPLNHPSENIISVPKVNAAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1002465 CV024_RS11830 WP_100267462.1 2534734..2536095(-) (luxO) [Vibrio fluvialis strain QY27]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACTCCGCTAGAGATCGATATCAACATCGTCGG
AACCGGGCGTGAAGCGATCGAAAGTATCGCGCACCGCGAACCGGATCTCATCCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGCTCGCCGGATGTACCTGTGATTTTTATGACCGCACATGGTTCAATT
GATACAGCGGTTGAGGCGATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCAGACCGCTTACGTGTCAC
GGTAAACAATGCGATTCGTAAAGCCAGCAAGCTGAAGAATGAAGCTGACAACCCGGGTAACCAGAATTACCAAGGCTTTA
TCGGCAGTAGTCAAACCATGCTTGCGGTGTACCGCACCATTGACTCCGCGGCCAGCAGTAAGGCAAGTATCTTCATTACT
GGAGAAAGCGGTACGGGTAAAGAGGTGTGCGCGGAAGCGATTCACGCCGCCAGTAGACGCGGCGACAAACCATTCATTGC
GATTAACTGTGCCGCGATTCCTAAAGATCTGATTGAAAGTGAACTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAG
CAACGGATCGCCAGGGCGCTGCAGAATTGGCCGATGGCGGCACTCTGTTCCTTGATGAGCTGTGCGAAATGGATCTCGAT
CTGCAGACTAAATTGTTGCGCTTTATTCAGACCGGTACCTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTGGATGT
GCGTTTTGTCTGTGCGACCAACCGCGACCCATGGAAAGAAGTACAGGAAGGCCGTTTCCGTGAAGATTTGTACTACCGTT
TGTACGTCATTCCACTGCATCTGCCGCCTTTACGTGAGCGTGGCGATGATGTCATTGAAATTGCCTACTCGCTGCTGGGC
TATATGTCGAAAGAAGAGGGCAAAGGCTTTGTCCGTCTCGCTCCGGAAGTCGTGGAACGTTTTAAAGAATACGAATGGCC
GGGTAATGTGCGTCAACTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCAATCTGAATATGC
TGCCACCACCGCTCAATCATCCAAGCGAAAACATCATCAGTGTTCCGAAGGTTAACGCCGCGCCCGTATCGGTTCACGAA
ATCTTCCCGTTGTGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCCTGTGATGGCAATATTCCGCGTGCTGC
CGGTTATCTGGACGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

90.583

98.455

0.892
  pilR Pseudomonas aeruginosa PAK

39.013

98.455

0.384

Multiple sequence alignment