Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL147_RS06895 Genome accession   NZ_LR134341
Coordinates   1407803..1409176 (+) Length   457 a.a.
NCBI ID   WP_007892244.1    Uniprot ID   G5K871
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1402803..1414176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS06865 (NCTC13786_01378) - 1403265..1403450 (-) 186 WP_007892247.1 hypothetical protein -
  EL147_RS06870 (NCTC13786_01379) - 1403617..1404165 (+) 549 WP_007892389.1 helix-turn-helix domain-containing protein -
  EL147_RS06875 (NCTC13786_01380) - 1404584..1404859 (+) 276 WP_007892280.1 AlpA family transcriptional regulator -
  EL147_RS06880 (NCTC13786_01381) - 1405035..1405997 (+) 963 WP_007892401.1 P63C domain-containing protein -
  EL147_RS06885 - 1406088..1407233 (+) 1146 Protein_1282 tyrosine-type recombinase/integrase -
  EL147_RS06890 (NCTC13786_01385) - 1407330..1407776 (+) 447 WP_007892289.1 dUTP diphosphatase -
  EL147_RS06895 (NCTC13786_01386) radA 1407803..1409176 (+) 1374 WP_007892244.1 DNA repair protein RadA Machinery gene
  EL147_RS06900 (NCTC13786_01387) - 1409298..1409795 (+) 498 WP_007892534.1 carbonic anhydrase -
  EL147_RS06905 (NCTC13786_01388) gltX 1410182..1411627 (+) 1446 WP_007892565.1 glutamate--tRNA ligase -
  EL147_RS06910 (NCTC13786_01389) - 1411988..1413334 (+) 1347 WP_007892385.1 GHKL domain-containing protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50032.30 Da        Isoelectric Point: 5.8264

>NTDB_id=1002115 EL147_RS06895 WP_007892244.1 1407803..1409176(+) (radA) [Streptococcus pseudoporcinus strain NCTC13786]
MAKKKATFVCQECGYHSPKYLGRCPNCSAWSSFVEEVEVQELKNARVSLTGEKSRPVKLKDVDNLNYSRTQTNMDEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGEIDNEFYLYAETNMQEIRIEIE
KIQPNFLIIDSIQTIMSPDSSGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTIAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVTNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKAAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGLDISQNIEVVGLSTVGEVLKAVFTKNTK

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1002115 EL147_RS06895 WP_007892244.1 1407803..1409176(+) (radA) [Streptococcus pseudoporcinus strain NCTC13786]
ATGGCTAAGAAAAAAGCAACATTTGTTTGTCAGGAATGTGGGTATCACTCTCCTAAATATTTAGGGCGTTGTCCCAACTG
CTCAGCCTGGTCTTCATTTGTGGAGGAAGTTGAAGTCCAAGAACTTAAAAATGCGCGTGTTAGCCTAACGGGTGAAAAAA
GTCGCCCGGTGAAACTAAAAGACGTTGATAACCTCAATTATTCCCGTACTCAGACCAACATGGATGAATTTAATCGAGTT
CTTGGCGGAGGTGTCGTTCCTGGCAGTCTTATCCTGATAGGAGGAGATCCTGGGATTGGTAAATCAACCTTACTCTTGCA
AGTTTCGACCCAGTTGGCCAATAAAGGAACTGTTTTATACGTTTCTGGGGAAGAATCAGCAGAACAAATTAAGTTGCGTA
GTGAACGTCTAGGTGAGATTGATAATGAATTTTATCTCTACGCCGAGACCAATATGCAAGAAATTAGAATTGAGATTGAG
AAAATTCAACCTAATTTTCTGATTATTGATTCTATTCAAACCATTATGAGTCCGGATAGTTCAGGTGTCCAAGGATCAGT
TAGTCAGGTAAGAGAAGTAACAGCGGAACTCATGCAATTAGCTAAGACTAATAATATTGCGACCTTTATAGTTGGACATG
TTACTAAAGAAGGAACCATAGCGGGTCCAAGAATGCTGGAGCATATGGTGGACACAGTTCTTTATTTTGAAGGGGAACGT
CATCATACCTTTAGGATTTTGCGAGCTGTTAAAAATCGTTTTGGATCAACTAATGAAATTGGTATTTTTGAAATGCAATC
AGGTGGTCTGGTTGAAGTTACTAATCCCAGTCAAGTTTTCCTAGAGGAACGCTTAGATGGGGCCACAGGCTCAGCTATCG
TTGTTACCATGGAAGGGAGTCGGCCAATTTTAGCCGAGGTCCAATCTTTAGTCACGCCAACTGTTTTTGGTAATGCCCGA
AGAACAACGACAGGGCTAGATTTCAATCGAGTTAGTTTAATTATGGCCGTTTTGGAAAAACGCTGTGGTTTGCTGTTACA
GAATCAGGATGCCTATCTGAAGGCCGCTGGAGGTGTCAAATTAGATGAGCCCGCTATTGACTTGGCTGTTGCAGTTGCCA
TTGCTTCAAGTTATAAGGAGTTGCCAACCAACCCTCAAGAAGCCTTTCTAGGAGAAATTGGTTTGACGGGTGAGATTAGA
CGGGTGACCCGCATTGAACAAAGGATTAATGAGGCAGCTAAGCTTGGCTTCACCAAGATTTATGCCCCTAAAAACGCCTT
ACAAGGGTTAGATATCTCTCAAAATATAGAAGTTGTTGGTCTATCAACTGTAGGTGAGGTTCTTAAAGCTGTCTTTACTA
AAAATACCAAGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(55-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K871

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

84.956

98.906

0.84
  radA Streptococcus pneumoniae D39

84.956

98.906

0.84
  radA Streptococcus pneumoniae R6

84.956

98.906

0.84
  radA Streptococcus pneumoniae TIGR4

84.956

98.906

0.84
  radA Streptococcus mitis NCTC 12261

84.956

98.906

0.84
  radA Streptococcus mitis SK321

84.956

98.906

0.84
  radA/sms Bacillus subtilis subsp. subtilis str. 168

60.486

99.125

0.6

Multiple sequence alignment