Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABFY42_RS16130 Genome accession   NZ_CP156682
Coordinates   3228620..3229264 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus velezensis strain B115     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3223620..3234264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFY42_RS16095 (ABFY42_16095) - 3224805..3225236 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  ABFY42_RS16100 (ABFY42_16100) - 3225236..3225577 (+) 342 WP_022553706.1 Na(+)/H(+) antiporter subunit C -
  ABFY42_RS16105 (ABFY42_16105) - 3225570..3227051 (+) 1482 WP_022553707.1 Na+/H+ antiporter subunit D -
  ABFY42_RS16110 (ABFY42_16110) - 3227057..3227533 (+) 477 WP_022553708.1 Na+/H+ antiporter subunit E -
  ABFY42_RS16115 (ABFY42_16115) - 3227533..3227817 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  ABFY42_RS16120 (ABFY42_16120) mnhG 3227801..3228175 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  ABFY42_RS16125 (ABFY42_16125) - 3228215..3228598 (-) 384 WP_014418761.1 hotdog fold thioesterase -
  ABFY42_RS16130 (ABFY42_16130) comA 3228620..3229264 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  ABFY42_RS16135 (ABFY42_16135) comP 3229345..3231636 (-) 2292 WP_022553709.1 histidine kinase Regulator
  ABFY42_RS16140 (ABFY42_16140) comX 3231648..3231812 (-) 165 WP_007613432.1 competence pheromone ComX -
  ABFY42_RS16145 (ABFY42_16145) - 3231812..3232690 (-) 879 WP_032860494.1 polyprenyl synthetase family protein -
  ABFY42_RS16150 (ABFY42_16150) degQ 3232875..3233015 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ABFY42_RS16155 (ABFY42_16155) - 3233472..3233813 (+) 342 WP_014418765.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=1002113 ABFY42_RS16130 WP_014418762.1 3228620..3229264(-) (comA) [Bacillus velezensis strain B115]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1002113 ABFY42_RS16130 WP_014418762.1 3228620..3229264(-) (comA) [Bacillus velezensis strain B115]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTTCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86

Multiple sequence alignment