Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | ABFY42_RS13125 | Genome accession | NZ_CP156682 |
| Coordinates | 2655591..2656628 (-) | Length | 345 a.a. |
| NCBI ID | WP_022552962.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain B115 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2650591..2661628
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFY42_RS13075 (ABFY42_13075) | - | 2650824..2651609 (-) | 786 | WP_007408329.1 | TasA family protein | - |
| ABFY42_RS13080 (ABFY42_13080) | - | 2651674..2652258 (-) | 585 | WP_022552967.1 | signal peptidase I | - |
| ABFY42_RS13085 (ABFY42_13085) | tapA | 2652230..2652901 (-) | 672 | WP_014418371.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ABFY42_RS13090 (ABFY42_13090) | - | 2653160..2653489 (+) | 330 | WP_012117979.1 | DUF3889 domain-containing protein | - |
| ABFY42_RS13095 (ABFY42_13095) | - | 2653530..2653709 (-) | 180 | WP_022552966.1 | YqzE family protein | - |
| ABFY42_RS13100 (ABFY42_13100) | comGG | 2653766..2654143 (-) | 378 | WP_022552965.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| ABFY42_RS13105 (ABFY42_13105) | comGF | 2654144..2654539 (-) | 396 | WP_046559876.1 | competence type IV pilus minor pilin ComGF | - |
| ABFY42_RS13110 (ABFY42_13110) | comGE | 2654553..2654867 (-) | 315 | WP_021494312.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| ABFY42_RS13115 (ABFY42_13115) | comGD | 2654851..2655288 (-) | 438 | WP_007612572.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ABFY42_RS13120 (ABFY42_13120) | comGC | 2655278..2655586 (-) | 309 | WP_014418376.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ABFY42_RS13125 (ABFY42_13125) | comGB | 2655591..2656628 (-) | 1038 | WP_022552962.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ABFY42_RS13130 (ABFY42_13130) | comGA | 2656615..2657685 (-) | 1071 | WP_014418378.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ABFY42_RS13135 (ABFY42_13135) | - | 2657878..2658828 (-) | 951 | WP_014418379.1 | magnesium transporter CorA family protein | - |
| ABFY42_RS13140 (ABFY42_13140) | - | 2658974..2660275 (+) | 1302 | WP_022552961.1 | hemolysin family protein | - |
| ABFY42_RS13145 (ABFY42_13145) | - | 2660313..2661143 (-) | 831 | WP_022552960.1 | STAS domain-containing protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39549.85 Da Isoelectric Point: 9.7504
>NTDB_id=1002099 ABFY42_RS13125 WP_022552962.1 2655591..2656628(-) (comGB) [Bacillus velezensis strain B115]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGDLLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATALIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMKERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGDLLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATALIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMKERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=1002099 ABFY42_RS13125 WP_022552962.1 2655591..2656628(-) (comGB) [Bacillus velezensis strain B115]
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTAAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGTTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCTGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGACTTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TCATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTGATCTTTGCGTTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATCCCCCTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGCTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCGGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGAAGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTAAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGTTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCTGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGACTTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TCATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTGATCTTTGCGTTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATCCCCCTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGCTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCGGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGAAGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
65.944 |
93.623 |
0.617 |