Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   EL147_RS05315 Genome accession   NZ_LR134341
Coordinates   1118468..1118680 (-) Length   70 a.a.
NCBI ID   WP_255261105.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1113468..1123680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS05280 (NCTC13786_01055) - 1113824..1114471 (-) 648 WP_007895353.1 CPBP family intramembrane glutamic endopeptidase -
  EL147_RS05285 (NCTC13786_01056) - 1114483..1114935 (-) 453 WP_007895660.1 hypothetical protein -
  EL147_RS05290 (NCTC13786_01057) - 1114932..1115141 (-) 210 WP_007895522.1 helix-turn-helix transcriptional regulator -
  EL147_RS05295 (NCTC13786_01058) - 1115418..1116611 (-) 1194 WP_007895376.1 acetate kinase -
  EL147_RS05300 (NCTC13786_01059) comGH 1116667..1117623 (-) 957 WP_007895578.1 class I SAM-dependent methyltransferase Machinery gene
  EL147_RS05305 (NCTC13786_01060) comGG 1117668..1118069 (-) 402 WP_007895389.1 competence type IV pilus minor pilin ComGG -
  EL147_RS05310 (NCTC13786_01061) comGF/cglF 1118047..1118508 (-) 462 WP_007895294.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL147_RS05315 comGE 1118468..1118680 (-) 213 WP_255261105.1 competence system putative prepilin ComGE Machinery gene
  EL147_RS05320 (NCTC13786_01062) comGD 1118733..1119071 (-) 339 WP_007896399.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL147_RS05325 comGC 1119121..1119447 (-) 327 Protein_1025 competence type IV pilus major pilin ComGC -
  EL147_RS05330 (NCTC13786_01064) comGB 1119447..1120532 (-) 1086 WP_255261104.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL147_RS05335 (NCTC13786_01065) comGA 1120414..1121355 (-) 942 WP_007895682.1 competence type IV pilus ATPase ComGA Machinery gene
  EL147_RS05340 (NCTC13786_01066) - 1121436..1121801 (-) 366 WP_007895383.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 70 a.a.        Molecular weight: 8218.62 Da        Isoelectric Point: 11.8101

>NTDB_id=1002095 EL147_RS05315 WP_255261105.1 1118468..1118680(-) (comGE) [Streptococcus pseudoporcinus strain NCTC13786]
MTLFVTAISRQQREMARMRHRQEAMAVALMAVQTNQDQLQVNGCRIHVVKNQKGLRISENHQEIFRITKK

Nucleotide


Download         Length: 213 bp        

>NTDB_id=1002095 EL147_RS05315 WP_255261105.1 1118468..1118680(-) (comGE) [Streptococcus pseudoporcinus strain NCTC13786]
GTGACACTTTTTGTGACTGCCATTAGTAGACAACAAAGAGAAATGGCTAGGATGCGTCATCGTCAAGAAGCTATGGCAGT
AGCGTTAATGGCCGTTCAAACAAATCAGGACCAACTACAAGTAAATGGTTGCCGTATCCACGTAGTTAAGAATCAAAAGG
GGCTTAGGATTAGTGAAAATCATCAGGAAATATTTAGGATTACAAAAAAATAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

39.13

98.571

0.386
  comGE Streptococcus mutans UA159

39.13

98.571

0.386

Multiple sequence alignment