Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BAMY6639_RS15385 Genome accession   NZ_CP006058
Coordinates   3157387..3158031 (+) Length   214 a.a.
NCBI ID   WP_015417113.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3152387..3163031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS15370 (BAMY6639_16115) glpD 3152557..3154224 (+) 1668 WP_003155341.1 glycerol-3-phosphate dehydrogenase -
  BAMY6639_RS15375 (BAMY6639_16120) - 3154364..3156106 (+) 1743 WP_012117166.1 phospho-sugar mutase -
  BAMY6639_RS15380 - 3156252..3157387 (+) 1136 Protein_3033 GAF domain-containing sensor histidine kinase -
  BAMY6639_RS15385 (BAMY6639_16125) vraR 3157387..3158031 (+) 645 WP_015417113.1 response regulator Regulator
  BAMY6639_RS15390 (BAMY6639_16130) - 3158031..3158555 (+) 525 WP_060674951.1 NADPH-dependent FMN reductase -
  BAMY6639_RS15395 (BAMY6639_16135) - 3158569..3158811 (-) 243 WP_003155335.1 YhdB family protein -
  BAMY6639_RS15400 (BAMY6639_16140) - 3159002..3159325 (+) 324 WP_031378436.1 DUF3889 domain-containing protein -
  BAMY6639_RS15405 (BAMY6639_16145) - 3159370..3160824 (-) 1455 WP_039252199.1 LysM peptidoglycan-binding domain-containing protein -
  BAMY6639_RS15410 (BAMY6639_16150) nsrR 3161003..3161437 (-) 435 WP_007610306.1 nitric oxide-sensing transcriptional repressor NsrR -
  BAMY6639_RS19850 (BAMY6639_20390) - 3161591..3162742 (-) 1152 Protein_3040 IS3 family transposase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23904.32 Da        Isoelectric Point: 5.3655

>NTDB_id=100207 BAMY6639_RS15385 WP_015417113.1 3157387..3158031(+) (vraR) [Bacillus amyloliquefaciens UMAF6639]
MKIVIADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALQQAEKTEPDMILMDLSMPDMDGIEAAKIAAERFPDISIVVL
TSYSDQEHVIPALKAGAKAYQLKDAQPDDLVKTLWEVYSGRYRLSADIVPHVLTHMVQDDQDKEKYDQLTPREKDVLQEI
AKGKSNKEIAAALFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNVFGKAVK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=100207 BAMY6639_RS15385 WP_015417113.1 3157387..3158031(+) (vraR) [Bacillus amyloliquefaciens UMAF6639]
ATGAAAATTGTGATTGCTGATGATCATCACGTTGTCCGCAAAGGACTGCGCTATTTCTTCGCCACTCAGGAAGACATTGA
AGTTGTCGGTGAGGCGTCCACCGGTGCTGAAGCGCTTCAGCAAGCTGAAAAGACGGAGCCGGACATGATTTTGATGGATT
TATCAATGCCTGATATGGACGGCATAGAAGCGGCAAAAATTGCGGCTGAACGATTTCCGGACATCAGTATCGTCGTTTTG
ACGAGCTATTCTGATCAGGAGCATGTCATTCCCGCCCTTAAAGCCGGCGCAAAAGCGTATCAGCTGAAAGACGCCCAGCC
CGATGATTTAGTGAAAACGCTCTGGGAAGTGTATTCCGGACGTTACCGGCTGTCGGCGGATATTGTGCCTCACGTGCTGA
CCCATATGGTTCAGGACGATCAGGATAAGGAAAAATATGATCAGCTCACCCCCCGTGAAAAAGATGTTCTTCAAGAAATA
GCCAAAGGGAAAAGCAATAAGGAAATTGCGGCGGCACTGTTTATTTCAGAAAAAACAGTGAAGACCCACGTGTCCAACCT
GCTGTCAAAGCTGAATCTTTCCGATCGGACGCAGGCGGCATTGTATGCGGTAAAATATAATGTTTTTGGAAAGGCGGTAA
AATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-113)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.81

98.131

0.43
  degU Bacillus subtilis subsp. subtilis str. 168

38.356

100

0.393