Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ABFG93_RS18075 Genome accession   NZ_CP156674
Coordinates   3518413..3519162 (+) Length   249 a.a.
NCBI ID   WP_347549412.1    Uniprot ID   -
Organism   Pseudalkalibacillus hwajinpoensis strain Zjut HJ2101     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3513413..3524162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFG93_RS18065 (ABFG93_18065) - 3515178..3516473 (+) 1296 WP_347549410.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ABFG93_RS18070 (ABFG93_18070) - 3516587..3518305 (+) 1719 WP_347549411.1 sensor domain-containing diguanylate cyclase -
  ABFG93_RS18075 (ABFG93_18075) comC 3518413..3519162 (+) 750 WP_347549412.1 prepilin peptidase Machinery gene
  ABFG93_RS18080 (ABFG93_18080) - 3519339..3520352 (+) 1014 WP_347549414.1 hypothetical protein -
  ABFG93_RS18085 (ABFG93_18085) - 3520609..3521187 (+) 579 WP_347549415.1 Maf family protein -
  ABFG93_RS18090 (ABFG93_18090) radC 3521240..3521911 (+) 672 Protein_3512 DNA repair protein RadC -
  ABFG93_RS18095 (ABFG93_18095) - 3522010..3523047 (+) 1038 WP_347549416.1 rod shape-determining protein -
  ABFG93_RS18100 (ABFG93_18100) mreC 3523064..3523942 (+) 879 WP_347549417.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 27525.52 Da        Isoelectric Point: 10.0467

>NTDB_id=1002027 ABFG93_RS18075 WP_347549412.1 3518413..3519162(+) (comC) [Pseudalkalibacillus hwajinpoensis strain Zjut HJ2101]
MGIIYSYLFLSGLVMGSFFNVVGLRVPKKLSIVRPRSSCPRCKRNLGPLELIPVVSFLFQKGKCKGCLSKISPIYAVIEF
ITAFLFMITPHLIGWSHELLVAYGLLSLLIIVSISDFVYMIIPDKVLLFFGGYFILVRVIVPLDLWYSPFLGAAVGFIFL
LLIAIISKGGMGGGDIKLFAVLGLVFGYQQLLLVFFFSTLCGTIIGLGALLTGKVKRKQPVPFGPSIAIGSLITYYFSSR
ILEWYVNLL

Nucleotide


Download         Length: 750 bp        

>NTDB_id=1002027 ABFG93_RS18075 WP_347549412.1 3518413..3519162(+) (comC) [Pseudalkalibacillus hwajinpoensis strain Zjut HJ2101]
TTGGGTATAATATACAGTTATTTATTTTTATCTGGCTTGGTTATGGGGTCATTTTTTAACGTTGTGGGCCTGCGTGTTCC
GAAGAAACTATCCATAGTGAGACCACGCTCTTCTTGTCCCCGCTGTAAGAGAAATCTGGGTCCCCTTGAATTAATTCCTG
TTGTTTCTTTTCTATTTCAAAAAGGAAAATGTAAAGGTTGTTTATCAAAAATTTCTCCCATATATGCTGTGATAGAATTT
ATAACAGCATTTCTTTTTATGATCACACCACATTTAATCGGATGGTCTCATGAATTATTGGTTGCTTATGGTCTTTTATC
ACTTTTAATAATAGTTTCAATTTCTGATTTTGTTTATATGATAATACCAGATAAGGTGTTATTATTTTTTGGCGGTTACT
TTATTCTCGTTAGAGTTATTGTTCCTTTGGATTTATGGTATAGTCCGTTTCTTGGAGCAGCTGTAGGATTCATATTTCTA
TTACTAATTGCTATTATAAGTAAAGGCGGTATGGGTGGGGGAGATATCAAGCTGTTTGCAGTCCTGGGTTTAGTATTTGG
TTATCAACAACTGTTGCTGGTGTTTTTCTTTTCTACTCTATGCGGAACAATAATTGGCTTAGGGGCATTATTAACTGGAA
AAGTAAAGCGAAAACAACCGGTACCATTTGGTCCTTCTATTGCAATTGGAAGCCTTATTACCTATTACTTTTCCAGCCGA
ATTTTAGAATGGTATGTGAATTTACTTTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(105-207)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(11-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

50.206

97.59

0.49

Multiple sequence alignment