Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   EL140_RS04825 Genome accession   NZ_LR134336
Coordinates   943341..946994 (+) Length   1217 a.a.
NCBI ID   WP_000802719.1    Uniprot ID   -
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 938341..951994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS04810 (NCTC11427_00944) - 939089..939550 (+) 462 WP_000170425.1 MarR family winged helix-turn-helix transcriptional regulator -
  EL140_RS04815 (NCTC11427_00945) - 939543..939962 (+) 420 WP_001138501.1 EVE domain-containing protein -
  EL140_RS04820 (NCTC11427_00946) rexB 940069..943344 (+) 3276 WP_000772320.1 ATP-dependent nuclease subunit B Machinery gene
  EL140_RS04825 (NCTC11427_00947) rexA 943341..946994 (+) 3654 WP_000802719.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  EL140_RS04830 (NCTC11427_00948) - 947012..948190 (+) 1179 WP_000174746.1 hypothetical protein -
  EL140_RS04835 - 948224..948580 (-) 357 WP_000560800.1 type II toxin-antitoxin system PemK/MazF family toxin -
  EL140_RS04840 (NCTC11427_00949) mazE 948564..948779 (-) 216 WP_001098942.1 type II toxin-antitoxin system PemI/MazE family antitoxin -
  EL140_RS04845 (NCTC11427_00950) ylqF 948996..949847 (+) 852 WP_000201310.1 ribosome biogenesis GTPase YlqF -
  EL140_RS04850 (NCTC11427_00951) - 949834..950613 (+) 780 WP_000207522.1 ribonuclease HII -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 140109.61 Da        Isoelectric Point: 5.2628

>NTDB_id=1002003 EL140_RS04825 WP_000802719.1 943341..946994(+) (rexA) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MKPISFLTEEEIQKLQEAEASSNKEQKKTAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFT
VKAATELKERLEKKISQQIQEGNDVDLKQHLGRQLADLPNAAIGTMDSFTQKFLGKHGYLIDIAPNFRILQNESEQLILK
NEVFHQVFEDHYQGENKEKFSRLVKNFAGRGKDERGLRQQVYKIYDFLQSTSSPQKWLNGSFLKGFEKADFANEKDKQTE
QIKQALWDMESFFRYHLDNDAKEFPKAAYLEAVQQVLDEISSLNQESDSQAYQAVLSRVVAISKEKNGRALANSSRKADL
KPLADAYNDERKTQFAKLGQLLDQITILDYQGRYHKDTWDLAKTFQTFMSDFVEAYRERKRQENAFEFADISHYTIEILE
NFPQVREAYQERFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNPKEGKLIL
LKENFRSSSEVLSATNDVFGRLMDQEVGEINYDSMHQLVFANTKLAPNPDNKAEFLLYDKDDSGQEEEESQTESKLTGEM
RLVIKEILKLHQEKGVAFKEIALLTSSRSRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALV
ALMKSPMFSFDEDELARLSLQKIEDKAQENLYEKLVNAQKLATSQKNLIYTALAEKLNQFMDILDSWRLYAKTHSLYDLI
WKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEVQHDLASVAVAPPKDAVELLTIHK
SKGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYIAKVETGAVEAHYPKTIKLSIPSLTYTQNEKELQLASYSEQ
MRLLYVAMTRAEKKLYLVGKGSREKLEAKEYPAANNGKLDSNTRLQARNFQDWVWAISKVFTKDNLNFSYRFVGEDLLTR
EAIGQLENKSPLQDSSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEITNQTQSS
EKKISFDLPDFSTKEKVTGAEIGSATHELMQRIDLIQQPTLASLTETLKQVQTSPAVRDKINLSKILAFFDTALGQEILA
NTSHLYREQPFSMLKKDQKSKEDFVVRGILDGYLLYEDRIVLFDYKTDRYDEPSQLIDRYRGQLALYGEALSRAYSIENI
EKYLILLGKDEVQVVKV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=1002003 EL140_RS04825 WP_000802719.1 943341..946994(+) (rexA) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGAAGCCCATTTCCTTTTTAACTGAGGAAGAAATTCAAAAACTGCAAGAAGCAGAAGCGAGTTCGAACAAGGAACAAAA
GAAAACAGCTGAGCAAATCGAAGCCATTTATACCGCAGGGCAAAATATCCTTGTTTCAGCGTCTGCTGGTTCAGGGAAGA
CCTTTGTCATGGCCGAACGCATTCTGGATCAGTTAGCGCGTGGTGTAGAAATCAGCCAACTCTTTATCTCGACCTTTACC
GTCAAGGCTGCTACAGAACTCAAAGAACGCTTGGAGAAAAAAATCAGCCAACAAATCCAAGAAGGTAACGATGTCGATCT
CAAACAACACTTGGGACGCCAGTTGGCAGACCTGCCAAACGCTGCCATCGGAACCATGGACTCCTTCACACAAAAATTCC
TTGGCAAGCATGGTTATCTGATTGATATCGCACCGAACTTCCGTATTTTGCAAAATGAAAGTGAACAGTTAATCCTCAAA
AATGAAGTTTTTCATCAGGTGTTTGAAGACCATTACCAAGGTGAGAATAAAGAGAAATTTAGCCGTTTGGTGAAGAACTT
TGCTGGGCGTGGCAAGGATGAACGTGGTCTGCGCCAGCAAGTCTACAAAATCTATGATTTCCTTCAATCCACCAGCAGTC
CCCAAAAATGGCTGAACGGGTCTTTCCTCAAAGGGTTTGAAAAAGCTGACTTTGCAAATGAAAAAGACAAACAAACTGAG
CAAATCAAGCAGGCGCTTTGGGACATGGAAAGTTTCTTCCGTTATCATCTGGATAACGATGCCAAGGAGTTTCCAAAAGC
TGCCTATTTAGAAGCTGTTCAACAGGTTCTGGATGAAATTAGCTCCTTAAATCAAGAGTCCGATAGCCAGGCTTATCAAG
CAGTGCTTTCTCGTGTTGTCGCCATCTCGAAGGAGAAAAATGGTCGAGCTCTGGCTAACTCCAGTCGTAAGGCCGATTTA
AAACCACTGGCTGATGCCTATAACGATGAGAGAAAGACCCAGTTTGCTAAACTAGGACAACTGTTAGATCAGATAACCAT
TCTCGACTATCAAGGGCGTTATCATAAAGATACCTGGGATCTAGCTAAAACCTTCCAAACCTTTATGAGTGATTTTGTGG
AGGCTTATCGTGAACGTAAACGCCAAGAAAATGCCTTTGAATTTGCTGATATTAGTCATTACACCATTGAGATTTTAGAG
AATTTCCCACAAGTCCGCGAGGCTTATCAGGAACGATTCCACGAAGTCATGGTCGATGAGTATCAGGATACTAACCACAT
TCAAGAACGGATGCTGGAATTGCTGTCGAATGGTCACAATCGCTTTATGGTGGGAGATATCAAGCAGTCTATCTACCGTT
TCCGTCAGGCAGATCCCCAAATTTTCAATGAAAAATTTCAACGCTATGCGCAAAATCCTAAAGAGGGTAAGTTGATACTC
CTCAAGGAAAATTTCCGTAGCAGTTCAGAAGTGCTATCAGCAACCAATGATGTTTTTGGACGTCTTATGGACCAAGAGGT
CGGCGAAATCAACTATGATAGCATGCACCAGCTTGTTTTTGCTAATACCAAGCTGGCTCCTAATCCAGACAACAAGGCAG
AATTTCTCCTCTACGATAAGGACGATAGTGGGCAAGAGGAGGAAGAGAGCCAAACAGAATCGAAACTAACTGGGGAAATG
CGTCTGGTCATCAAGGAAATCTTGAAGCTCCATCAAGAGAAAGGTGTAGCCTTTAAGGAAATTGCCCTTTTGACTTCCAG
TCGCAGTCGAAATGACCAGATTCTACTTGCCCTGTCTGAGTACGGAATTCCAGTTAAAACCGACGGTGAGCAAAACAACT
ACCTCCAATCCCTAGAAGTACAAGTCATGCTGGACACCCTGCGCGTCATTCACAATCCCCTGCAAGACTATGCCTTGGTA
GCTCTGATGAAGTCTCCTATGTTTAGTTTCGATGAGGACGAGTTGGCACGCTTGTCCCTTCAGAAAATAGAAGATAAGGC
CCAAGAAAATCTCTATGAGAAACTGGTCAATGCTCAAAAACTGGCAACAAGTCAGAAAAACTTGATTTATACAGCTCTAG
CTGAAAAACTCAATCAATTCATGGATATTTTGGATTCTTGGCGCTTGTATGCCAAAACCCACTCTCTCTATGACTTGATT
TGGAAGATTTACAACGACCGTTTTTACTATGACTATGTTGGAGCCCTGCCAAACGGTCCAGCTAGACAGGCCAATCTCTA
TGCCCTAGCTCTACGAGCTGACCAGTTTGAAAAGAGTAATTTCAAGGGCTTGTCTCGTTTTATCCGTATGATTGACCAAG
TCCTAGAAGTCCAGCACGATCTCGCAAGTGTAGCCGTCGCACCGCCTAAAGATGCTGTGGAACTCTTGACCATTCACAAG
AGCAAAGGACTGGAGTTTCCTTATGTCTTTATCCTCAACATGGATCAGGACTTCAACAAGCAAGACTCGATGTCAGACGT
CATTCTCAGCCGTCAAAATGGGCTTGGTGTCAAATACATTGCCAAGGTGGAAACAGGAGCAGTGGAAGCACACTATCCTA
AAACCATCAAACTCTCCATTCCTAGCCTGACCTATACGCAGAATGAGAAAGAACTGCAACTGGCTAGCTATTCAGAGCAG
ATGCGTCTGCTGTATGTTGCCATGACAAGGGCTGAGAAAAAGCTCTATCTTGTTGGCAAGGGCTCTCGCGAAAAGCTAGA
AGCCAAGGAATACCCAGCAGCAAACAATGGAAAATTAGATAGCAATACCAGACTGCAAGCAAGAAATTTCCAAGATTGGG
TCTGGGCTATCAGTAAAGTATTTACCAAGGACAATCTCAACTTTAGCTATCGTTTTGTTGGTGAAGACCTGTTGACTAGA
GAAGCTATTGGTCAATTGGAAAACAAGAGCCCTCTCCAAGATAGCTCTCAAGCAGACAATCGCCAGTCAGAAACTATCAA
AGAAGCTTTGGAAATGCTGAAAGAGGTGGAAGTTTATAATACTCTTCACCGCGCAGCCATTGAACTACCAAGTGTTCAAA
CCCCAAGCCAAATCAAGAAATTCTACGAACCGGTTATGGATATGGAAGGGGTAGAAATTACTAACCAAACTCAATCATCG
GAAAAGAAAATCAGCTTTGATTTACCAGATTTTTCAACTAAAGAAAAGGTAACTGGAGCTGAGATTGGTAGTGCAACCCA
CGAACTCATGCAAAGAATTGACCTCATTCAGCAACCAACACTTGCTAGCCTGACAGAAACTCTCAAACAAGTTCAGACTA
GTCCAGCTGTTAGAGACAAGATCAATCTTTCTAAAATTCTTGCCTTCTTTGATACAGCACTTGGTCAGGAAATTCTCGCT
AATACCAGCCATCTTTACCGCGAGCAACCTTTCTCCATGCTCAAAAAAGATCAAAAGAGTAAGGAAGATTTCGTTGTCCG
TGGAATCTTGGATGGCTATCTGCTTTATGAGGATCGCATCGTTCTTTTCGACTACAAAACAGACCGTTACGATGAACCAA
GTCAACTCATAGACCGCTATCGTGGTCAGTTAGCCTTATACGGAGAGGCTTTATCTAGAGCCTATTCGATTGAAAACATA
GAAAAATACTTGATTTTGCTCGGCAAAGACGAGGTTCAAGTTGTAAAAGTATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(479-897)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

91.701

100

0.917