Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   EL140_RS04820 Genome accession   NZ_LR134336
Coordinates   940069..943344 (+) Length   1091 a.a.
NCBI ID   WP_000772320.1    Uniprot ID   -
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 935069..948344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS04790 (NCTC11427_00940) - 935402..936280 (+) 879 WP_000639367.1 sensor histidine kinase -
  EL140_RS04795 (NCTC11427_00941) - 936319..937071 (-) 753 WP_000581965.1 ABC transporter permease -
  EL140_RS04800 (NCTC11427_00942) - 937082..937990 (-) 909 WP_000859679.1 ATP-binding cassette domain-containing protein -
  EL140_RS04805 (NCTC11427_00943) - 938133..938942 (-) 810 WP_000593587.1 Cof-type HAD-IIB family hydrolase -
  EL140_RS04810 (NCTC11427_00944) - 939089..939550 (+) 462 WP_000170425.1 MarR family winged helix-turn-helix transcriptional regulator -
  EL140_RS04815 (NCTC11427_00945) - 939543..939962 (+) 420 WP_001138501.1 EVE domain-containing protein -
  EL140_RS04820 (NCTC11427_00946) rexB 940069..943344 (+) 3276 WP_000772320.1 ATP-dependent nuclease subunit B Machinery gene
  EL140_RS04825 (NCTC11427_00947) rexA 943341..946994 (+) 3654 WP_000802719.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  EL140_RS04830 (NCTC11427_00948) - 947012..948190 (+) 1179 WP_000174746.1 hypothetical protein -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124650.43 Da        Isoelectric Point: 5.8580

>NTDB_id=1002002 EL140_RS04820 WP_000772320.1 940069..943344(+) (rexB) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLVLNDLPAKTS
LDDIGLGMTFYKCLAELDPKDLRVYGAIKQDPQFIQQLMELYHEMTTAQMSFLDLESLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSHLIEAIENDKVSSDFSQIALVIDGFTRFSAEEERVVDLLHRKGVEIVIGAYASKKAYISPFTEGNLYQAS
VEFLHHLGAKYQTPAQDRSQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLH
DHPELSYKNFRILLGDVASYRLSLKTIFDQYQIPFYLGRSESMSHHPLTQYAESILRLKRYRFRQEDLINLLRTGLYTDL
SQADIDAFEQYLRYLGINGLPSYQQTFTKSHHGKFDLERLNSLRLRVLAPLETLFASRKQKAENLLQKWNAFLKNAALSK
QMQELTATMETLEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLSLLHSGMSLSQYRTIPATVDTVLVQSYDLIAPMT
ADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKNRYTMLSLVNAARKQLILSAPSLLNENE
SKESAYLQELVGFGFSRLEKKIHQKSLSKDDMGSYHSLLSSLVSYHQQAGSSENEEDLTFVKVLARVMGKKLDQKGLTNP
ALPTSPSSKPLEKETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRILERALKLPA
ENSFDQRLEQAIKETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIQEEATFGGKDQAFIQLDNGRSV
HVRGKVDRIDRLKADGALGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQDFFGAMYLEMAEPVQSLLTVKSLA
GAVVEVSKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILQGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLDLSDGKRLVGEKLKQAWFEKMREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=1002002 EL140_RS04820 WP_000772320.1 940069..943344(+) (rexB) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACTGAAATTTTAACGAGAGAGGCAGAAGAGCTAGTTGCTGCAGG
CAAGCGGGTTTTCTACATCGCCCCCAACTCTCTTTCATTTGAAAAGGAACGTGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTTACGCGTTTCGCTCAAATGGCTCGTTACCTGGTCTTGAATGACTTGCCAGCTAAGACGAGT
CTTGATGACATCGGGCTTGGGATGACTTTTTATAAATGCCTTGCCGAACTCGATCCCAAGGACTTGCGTGTTTATGGTGC
GATTAAGCAGGATCCTCAATTTATCCAGCAGTTGATGGAACTTTATCATGAGATGACGACTGCTCAGATGAGCTTTTTGG
ACTTGGAAAGTTTGACTGATGAGGATAAACGAGCAGATTTACTCTTGATTTTTGAGAAAGTAACAGCCTATCTTAATCAA
GGTCAGTTGGCTCAGGGAAGTCAGCTGTCCCATTTGATTGAGGCTATTGAGAATGACAAGGTAAGCAGTGATTTCAGTCA
GATTGCCTTGGTTATTGATGGATTTACCCGTTTTTCTGCCGAGGAAGAGCGTGTAGTGGATCTGCTTCATCGAAAAGGTG
TCGAGATTGTCATTGGTGCTTATGCAAGCAAGAAAGCCTATATCAGTCCGTTCACTGAAGGTAATCTCTATCAAGCCAGT
GTGGAATTTCTTCATCATTTGGGGGCAAAATACCAAACACCTGCTCAGGATCGTTCTCAGACTCATGAGAAAATGGATAG
TTTTGACAAGGCTTCTCGTTTGCTAGAGTCTTCTTATGACTTTTCAGAACTCGCTTTAGATGTTGATGAGAAGGATCGTG
AAAATCTGCAAATCTGGTCCTGCTTGACGCAAAAAGAGGAGTTGGAGTTAGTAGCGCGTAGCATTCGTCAGAAATTACAT
GACCATCCAGAACTGAGTTACAAGAATTTCCGTATTTTGCTGGGGGATGTGGCATCTTACCGGCTATCACTGAAAACTAT
TTTTGACCAGTACCAGATTCCTTTCTATCTTGGTAGAAGTGAATCCATGTCCCATCATCCCTTAACCCAGTATGCCGAAT
CTATTTTGCGTTTGAAACGCTACCGTTTTCGTCAGGAGGATTTGATTAATCTCCTCAGAACTGGTCTGTATACTGACCTT
AGCCAAGCGGATATTGATGCTTTTGAGCAATATCTCCGCTATCTTGGTATCAATGGCTTGCCATCTTATCAGCAGACCTT
TACCAAATCCCACCATGGAAAATTTGATTTAGAGCGTTTAAATTCTCTTCGTCTGCGCGTTTTGGCGCCACTTGAAACCT
TATTTGCCAGTCGAAAACAAAAGGCTGAAAATCTCTTGCAAAAGTGGAATGCTTTTCTAAAAAATGCTGCTTTAAGCAAG
CAGATGCAAGAATTGACAGCTACTATGGAAACTCTAGAACAGGAAAGACAAGCCGAAGTTTGGAAAGCCTTCTGCCATGT
TTTAGAACAATTTGCGACCGTTTTTGCCGGTTCACAAGTTAGTCTAGAGGACTTCCTGTCCTTGCTTCATTCTGGGATGA
GTTTGTCCCAGTATCGCACCATTCCAGCAACTGTTGATACTGTTCTGGTGCAGAGTTATGATTTGATTGCACCTATGACC
GCTGACTTTGTCTACGCCATCGGGCTGACTCAGGATCATTTACCAAAAATTGCGCAAAACACCAGCCTGTTAACAGACGA
AGAAAGACAAAGCCTAAACCAAGCGACTGAAGAGGGAGCACAATTACTGATTGCAAGTAGTGAAAACCTCAAGAAAAATC
GCTACACCATGCTTTCCTTAGTCAATGCTGCCCGTAAACAATTGATTTTGTCAGCTCCAAGTCTTCTTAATGAAAATGAG
AGCAAGGAATCAGCCTATCTTCAGGAACTGGTGGGTTTTGGATTTAGCCGGTTAGAGAAGAAGATTCATCAAAAAAGTCT
GTCTAAGGATGATATGGGTTCATATCACAGTCTCTTGTCTAGTCTCGTTTCCTATCATCAGCAGGCGGGTTCTAGTGAAA
ATGAAGAAGATTTGACCTTTGTCAAGGTTCTGGCGCGTGTGATGGGGAAAAAACTTGACCAAAAAGGTCTTACAAATCCT
GCACTCCCAACTAGCCCAAGCAGCAAGCCATTAGAGAAAGAGACCTTGCAGGCTCTCTATCCAGCTGACAAAGAGTTTTA
CCTGTCTACGTCTGGTTTGACAGAGTTTTACCGCAATGAATACAGTTATTTCCTCCGTTATGTCTTAGGTTTGCAGGAAG
AATTGCGCCTGCGTCCAGATGCTCGCAGTCATGGGAATTTCTTGCACCGTATTTTGGAACGTGCCTTGAAACTACCTGCT
GAAAATTCCTTTGATCAGCGTTTGGAACAAGCCATTAAGGAAACCAGCCAAGAACGCGAATTTGAAGCTATTTATCAAGA
AAGTTTGGAAGCCCAATTTACCAAGGAAGTTCTTCTTGATGTTGCTCGGACAACTGGGCATATCCTCCGCCATAATCCAG
CCATTGAAACCATCCAAGAGGAAGCAACATTTGGTGGTAAAGATCAGGCCTTTATTCAATTGGATAATGGTCGGAGTGTC
CATGTGCGAGGCAAGGTTGACCGTATTGACCGCCTGAAAGCTGATGGAGCACTGGGAGTGGTGGACTACAAGTCTAGTCT
GACTCAGTTCCAGTTTCCTCATTTCTTTAATGGGCTTAATTCCCAACTGCCTACCTATCTTGCTGCCCTAAAAAGAGAAG
GGGAGCAGGACTTTTTCGGAGCCATGTACTTGGAAATGGCTGAACCTGTCCAATCTCTGTTGACCGTTAAGAGTCTGGCA
GGAGCAGTAGTAGAAGTCAGCAAATCAATGAAATACCAAGGACTCTTTTTAGAAAAAGAAAGCAGTCACTTGGGCGAATT
TTACAACAAAAACAAGGCCAACCAGCTGACAGACGAGGAATTCCAGCTCTTATTGGACTACAATGCCCATCTTTACAAGA
AGGCAGCTGAGAAGATTTTACAAGGCCAGTTCGCCATCAATCCCTATACCGAAAATGGCAGAAGCATTGCCCCATACGTT
CAGCAACACCAAGCCATTACTGGATTTGAAGCAAATTACCACTTGGGACAAGCCCGTTTCCTTGAGAAATTAGACTTATC
TGATGGCAAGCGTCTGGTAGGAGAAAAACTTAAGCAAGCTTGGTTTGAAAAAATGAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

89.918

100

0.899