Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   EL133_RS05350 Genome accession   NZ_LR134323
Coordinates   1033328..1033993 (-) Length   221 a.a.
NCBI ID   WP_006740080.1    Uniprot ID   G5KFY6
Organism   Streptococcus urinalis strain NCTC13766     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1028328..1038993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS05320 (NCTC13766_01103) - 1028502..1029302 (-) 801 WP_006739144.1 hypothetical protein -
  EL133_RS05325 (NCTC13766_01104) - 1029527..1029826 (-) 300 WP_006739359.1 DUF5960 family protein -
  EL133_RS05330 (NCTC13766_01105) - 1029837..1030193 (-) 357 WP_006738864.1 hypothetical protein -
  EL133_RS05335 (NCTC13766_01106) - 1030190..1031602 (-) 1413 WP_006740019.1 Y-family DNA polymerase -
  EL133_RS05340 (NCTC13766_01107) - 1031609..1032295 (-) 687 WP_006739575.1 helix-turn-helix transcriptional regulator -
  EL133_RS05345 (NCTC13766_01108) - 1032390..1033331 (-) 942 WP_006740537.1 HAMP domain-containing sensor histidine kinase -
  EL133_RS05350 (NCTC13766_01109) braR 1033328..1033993 (-) 666 WP_006740080.1 response regulator transcription factor Regulator
  EL133_RS05355 (NCTC13766_01110) - 1034037..1036001 (-) 1965 WP_006738775.1 ABC transporter permease -
  EL133_RS05360 (NCTC13766_01111) - 1036003..1036755 (-) 753 WP_006739081.1 ABC transporter ATP-binding protein -
  EL133_RS05365 - 1037089..1037526 (+) 438 Protein_1046 PASTA domain-containing protein -
  EL133_RS05370 (NCTC13766_01113) trmFO 1037545..1038879 (-) 1335 WP_006740113.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25478.41 Da        Isoelectric Point: 6.0233

>NTDB_id=1001680 EL133_RS05350 WP_006740080.1 1033328..1033993(-) (braR) [Streptococcus urinalis strain NCTC13766]
MIKKEKIYIIEDDQTIVSLLKSHLKENYDVYTVLNFRDIKNEVESLSPDIILMDIGLPYFNGFYWTSEIRKSLTVPIIFI
SSSNDDMDAVMALNMGGDDFISKPFSLMILEAKIAALLRRSHQFASDDLQIGGYHLSLDGIFKNQEETVTLSPTETKILA
FLISRKEQVVSKEDILQRLWENDNFIDHNTLNVNMTRLRKKLQTIGFNRIHTVRGVGYLIK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1001680 EL133_RS05350 WP_006740080.1 1033328..1033993(-) (braR) [Streptococcus urinalis strain NCTC13766]
ATGATTAAAAAAGAAAAAATCTATATTATTGAAGACGATCAAACAATAGTTAGTTTACTAAAATCACATCTAAAGGAAAA
TTATGATGTTTATACGGTTTTAAATTTTAGAGATATTAAAAATGAAGTAGAATCACTTTCTCCAGATATTATCTTAATGG
ATATTGGATTGCCTTATTTTAATGGTTTTTATTGGACAAGTGAAATTAGAAAATCATTAACAGTGCCTATTATTTTTATT
TCTAGTAGTAATGATGATATGGATGCTGTTATGGCTCTTAATATGGGTGGTGATGATTTTATTTCAAAACCTTTTTCATT
AATGATTTTGGAAGCTAAAATTGCAGCATTATTGAGGAGAAGCCACCAATTTGCTAGTGATGATTTACAAATTGGTGGTT
ATCATTTAAGTCTAGACGGTATCTTTAAAAATCAAGAAGAAACAGTCACTTTATCACCTACTGAAACTAAGATTTTAGCC
TTTTTAATCAGTCGTAAAGAGCAGGTTGTTTCTAAAGAAGATATTTTACAACGACTCTGGGAAAACGACAACTTTATCGA
TCATAATACTTTGAATGTTAATATGACTAGATTACGTAAAAAACTACAAACAATTGGCTTCAATCGTATTCATACAGTTA
GAGGAGTGGGGTATCTTATTAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KFY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

50.459

98.643

0.498
  micA Streptococcus pneumoniae Cp1015

34.783

100

0.362