Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   EL133_RS04350 Genome accession   NZ_LR134323
Coordinates   844372..848013 (+) Length   1213 a.a.
NCBI ID   WP_006740521.1    Uniprot ID   -
Organism   Streptococcus urinalis strain NCTC13766     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 839372..853013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS04340 (NCTC13766_00897) - 840073..840987 (-) 915 WP_006739344.1 neutral zinc metallopeptidase -
  EL133_RS04345 (NCTC13766_00898) rexB 841143..844382 (+) 3240 WP_006739990.1 ATP-dependent nuclease subunit B Machinery gene
  EL133_RS04350 (NCTC13766_00899) rexA 844372..848013 (+) 3642 WP_006740521.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  EL133_RS11570 - 848040..849188 (-) 1149 Protein_849 cobalamin-independent methionine synthase II family protein -
  EL133_RS11575 - 849316..849618 (-) 303 Protein_850 hypothetical protein -
  EL133_RS04365 (NCTC13766_00903) - 849781..850767 (+) 987 WP_006739059.1 rhodanese-related sulfurtransferase -
  EL133_RS04370 (NCTC13766_00904) - 850812..850988 (-) 177 WP_006739672.1 DUF3042 family protein -
  EL133_RS04375 (NCTC13766_00905) miaA 851154..852035 (+) 882 WP_006739781.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -

Sequence

Protein


Download         Length: 1213 a.a.        Molecular weight: 140653.38 Da        Isoelectric Point: 5.4762

>NTDB_id=1001672 EL133_RS04350 WP_006740521.1 844372..848013(+) (rexA) [Streptococcus urinalis strain NCTC13766]
MNYEPFLDKEAIEKLKIEELSSDKQQKRTSEQIEAIYSSGQNILISASAGSGKTFVMVERIMDMIKRGVSIDRLFISTFT
VKAAGELKDRLRTKLQTAIKEETSPQEKNRLNDQINAISLADIGTMDAFTQKLVNQYGYLIGVSPQFRILQDVTEQDIFK
NTIFTELFESYLNGKDAKLFRQLVRNFSGNRKDNYAFKQLVYAIYQFSQSTENPKEWLETTFLKASLDLQSFDAISNQRI
NQFLEIMHQTADSLKDLTDLEEYPRFKKDGKPTKKYTQHLALIEKLHESALHFETDYGKEKLSQLAKELAALLPSGTDIT
IAKVSYSVFKAIQNEIQYFRHLETIFQYQPETILLLELLQSFVLTFSQQYLALKKEENCFEFGDIAHFAIQILEENQVIR
QTFQEKYHEVMVDEYQDNNHTQERLLELLSNGHNRFMVGDIKQSIYRFRQADPAIFNAKFQDYLNHPQHGKLIILKENFR
SQNEVISVTNQVFKHLMDVQIGDIDYDDNHSLKAGSERQLIAKPENKAQILLYDNSLQDNSEYKEESANPIDPGEVKIIA
KEIIRLHNHENVAFNEITLLVSSRTRNDSIIRLFNQYGIPLAADGGEQNYLQSVEVMVMLETLRTIDNPLNDYALIALLR
SPMFFFDEDDLARISLQGKKDKKKENFYEKLKNAKAHSGEHPELITADLSQKIVTFETYLDKWRTLSRNTALYELIWTIY
NDRFYFDYVGDSPKAEQAQANLYALALRANQFEKNGFRGLSRFINMIDHIIETENDLASVEAVVPKDAVSLMTIHKSKGL
EFPYVFILNIDKKFSFTDVNAQAILSRKNGIGIKYTADFKEALQETILPSVPVVLETLPYQVNRAELKLATLSEQMRLLY
VAMTRAEKKLYLVGKANQDKWETKFQMESENQKIPLIERQSMSSFMEWLLAIDHIFKDTKEYMEITYISDHELSDDKIGQ
LKQTDKIRANVVLKERQSQEIVDALKRLEAVQILNKQYEPAINQPAVRTPSQVKKLYEPVQDTEGVDIEKDSYSKSRQFE
LPSLDKRLDIKATQIGSSIHELMQRLPLEAEITESVIEKTIDEMLLPTELRRQIDSKMIFDFFNHTKLGQLMLSYPENLF
REAPFAMLKKDDISHEDYVIRGIIDGYFVFENQLILFDYKTDHYKNTLDVVKRYKGQMSLYAESLLKAYPNREIKSFLIL
LGGKQVEVVEVNN

Nucleotide


Download         Length: 3642 bp        

>NTDB_id=1001672 EL133_RS04350 WP_006740521.1 844372..848013(+) (rexA) [Streptococcus urinalis strain NCTC13766]
ATGAACTATGAACCTTTTTTAGATAAAGAAGCTATTGAAAAGTTAAAGATTGAGGAATTATCCTCAGATAAGCAACAAAA
AAGAACATCAGAACAGATTGAAGCTATCTATAGTAGTGGCCAAAATATTTTAATTTCAGCGTCTGCAGGATCTGGAAAAA
CCTTTGTCATGGTTGAGAGAATAATGGATATGATTAAACGAGGTGTTTCGATAGACCGACTTTTCATATCAACTTTTACT
GTAAAGGCGGCAGGTGAATTAAAAGATCGTTTAAGAACAAAACTTCAAACAGCAATTAAAGAAGAAACTTCTCCTCAAGA
AAAAAATCGCTTAAATGATCAGATTAACGCGATTTCACTAGCTGATATTGGGACTATGGATGCTTTTACACAAAAGTTGG
TTAATCAATATGGTTATCTTATCGGAGTTTCTCCACAATTTAGAATACTTCAGGATGTGACTGAACAGGATATTTTTAAA
AATACCATTTTCACTGAATTATTTGAATCTTATTTAAATGGAAAAGATGCTAAACTATTTAGACAATTGGTTCGAAATTT
TTCAGGAAATCGAAAAGACAACTATGCTTTCAAACAATTGGTTTATGCTATTTATCAATTTAGCCAATCAACAGAAAATC
CAAAAGAATGGTTAGAAACAACATTTTTAAAAGCCAGTTTAGACTTACAATCTTTTGATGCCATTTCAAATCAACGTATC
AATCAATTTTTAGAAATAATGCACCAAACTGCTGATTCTCTAAAAGATTTAACAGATTTAGAAGAGTATCCACGTTTTAA
GAAAGATGGTAAACCCACAAAAAAATACACTCAACATTTAGCATTAATCGAGAAATTACATGAGAGTGCACTACACTTTG
AAACTGATTATGGTAAAGAAAAACTGAGTCAACTAGCAAAAGAATTGGCTGCATTATTACCATCAGGAACGGATATTACT
ATTGCAAAGGTTTCTTATTCCGTTTTTAAGGCTATTCAAAATGAAATTCAATATTTTAGACACTTAGAGACTATTTTTCA
ATACCAGCCTGAAACAATTCTTTTACTTGAACTATTGCAGTCCTTTGTATTGACTTTTTCACAACAGTATTTAGCTTTGA
AGAAAGAAGAAAATTGTTTTGAGTTTGGGGATATTGCACATTTTGCAATTCAGATTTTAGAAGAAAATCAAGTGATTAGA
CAAACTTTTCAAGAGAAATATCATGAAGTTATGGTCGATGAGTATCAGGATAATAACCATACTCAAGAAAGATTATTAGA
GCTATTATCAAATGGTCATAATCGCTTTATGGTAGGTGATATTAAACAATCAATTTATAGGTTTAGACAAGCAGATCCAG
CTATTTTTAATGCTAAATTTCAAGACTATTTAAACCATCCCCAACATGGCAAACTAATTATTTTAAAAGAAAATTTTAGA
AGTCAAAATGAAGTGATTTCAGTAACAAATCAGGTGTTTAAACACTTAATGGATGTCCAAATAGGTGATATCGATTATGA
TGACAATCATTCTTTAAAAGCTGGAAGTGAAAGGCAATTAATTGCAAAACCAGAAAATAAAGCTCAGATTTTACTTTATG
ACAATAGTCTTCAAGATAATTCTGAATATAAAGAAGAATCAGCTAATCCTATAGATCCAGGTGAAGTTAAGATAATTGCC
AAAGAAATTATCAGATTGCATAATCATGAGAATGTTGCATTTAATGAAATCACCTTGTTAGTCTCCTCTAGAACAAGAAA
TGATAGTATAATTAGACTGTTTAATCAGTATGGCATTCCTTTAGCTGCTGATGGAGGAGAGCAAAATTACCTTCAGTCGG
TTGAAGTAATGGTCATGCTTGAAACACTAAGAACAATTGATAATCCTTTGAATGATTATGCATTAATTGCTTTACTTCGT
TCGCCAATGTTCTTTTTTGATGAAGATGATTTAGCTAGAATTTCTCTTCAAGGTAAAAAGGATAAGAAAAAAGAAAATTT
CTATGAAAAACTAAAAAATGCCAAGGCTCATTCAGGAGAACATCCTGAACTAATAACAGCTGACCTTTCACAAAAAATAG
TTACTTTTGAAACCTATTTAGATAAATGGAGAACATTATCTAGAAATACAGCACTTTATGAATTAATTTGGACCATTTAC
AACGACCGATTTTATTTTGATTATGTTGGAGATAGCCCCAAAGCAGAACAAGCACAAGCTAATCTTTATGCATTAGCACT
TAGGGCCAACCAATTTGAAAAGAATGGTTTTAGAGGTTTATCACGATTTATTAATATGATTGATCATATTATTGAAACAG
AAAATGATTTAGCTTCTGTTGAAGCGGTTGTTCCAAAAGATGCAGTTAGTTTAATGACAATTCATAAATCAAAAGGGCTT
GAATTTCCATATGTGTTTATTTTGAATATTGACAAAAAATTTAGTTTCACTGATGTCAATGCTCAAGCAATATTAAGTCG
AAAAAATGGAATTGGAATAAAGTACACTGCAGATTTTAAAGAAGCTCTACAAGAGACAATTCTTCCTAGTGTCCCTGTAG
TATTAGAAACACTTCCTTATCAGGTCAATCGTGCTGAACTAAAATTAGCAACCCTATCAGAACAAATGAGATTACTCTAT
GTTGCGATGACAAGAGCAGAAAAGAAACTTTATCTTGTTGGTAAAGCAAATCAAGATAAATGGGAAACTAAATTTCAGAT
GGAGTCTGAAAACCAAAAAATCCCTCTTATCGAGAGACAATCAATGTCAAGTTTTATGGAATGGTTATTAGCGATTGATC
ACATATTTAAAGATACCAAAGAATATATGGAGATCACTTATATTTCTGATCATGAGTTATCAGATGACAAAATAGGCCAG
CTAAAACAAACTGATAAGATTAGAGCAAATGTAGTCTTAAAAGAGAGACAGAGTCAAGAGATTGTTGATGCCCTAAAACG
ACTTGAAGCTGTTCAAATCTTAAACAAGCAATATGAACCAGCTATCAATCAACCAGCTGTTAGAACGCCAAGTCAAGTCA
AGAAACTATACGAGCCAGTACAAGATACAGAAGGCGTTGATATTGAAAAGGACTCTTACTCAAAATCAAGACAATTTGAA
TTACCAAGTTTAGACAAAAGGTTAGATATCAAAGCGACACAAATCGGATCTAGTATTCATGAATTAATGCAAAGACTCCC
ACTAGAAGCTGAAATAACAGAATCTGTAATTGAAAAAACCATTGATGAGATGTTATTGCCAACTGAATTAAGGCGCCAAA
TAGATTCTAAAATGATATTTGATTTTTTCAATCATACAAAACTAGGTCAGTTGATGCTTTCTTATCCTGAAAATCTTTTT
CGTGAAGCTCCTTTTGCAATGTTAAAAAAAGATGATATCAGTCATGAAGATTATGTCATTCGTGGAATTATAGATGGTTA
TTTTGTTTTTGAAAATCAATTGATATTATTTGATTATAAGACAGATCACTATAAAAATACTTTAGATGTGGTAAAGCGGT
ATAAAGGTCAAATGTCACTTTATGCAGAAAGTCTTTTGAAAGCTTATCCTAATAGAGAAATTAAGTCATTTTTGATTTTA
TTGGGTGGTAAGCAAGTTGAAGTAGTTGAAGTAAATAACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1040-1194)

UvrD-like helicase C-terminal domain (UvrD_C)

(473-893)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

47.445

100

0.482

Multiple sequence alignment