Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   EL133_RS04345 Genome accession   NZ_LR134323
Coordinates   841143..844382 (+) Length   1079 a.a.
NCBI ID   WP_006739990.1    Uniprot ID   G5KF25
Organism   Streptococcus urinalis strain NCTC13766     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 836143..849382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS04325 (NCTC13766_00894) - 837839..838201 (+) 363 WP_006739685.1 OsmC family protein -
  EL133_RS04330 (NCTC13766_00895) - 838285..839361 (+) 1077 WP_006739524.1 ABC transporter permease -
  EL133_RS04335 (NCTC13766_00896) - 839371..840057 (+) 687 WP_006740115.1 ABC transporter ATP-binding protein -
  EL133_RS04340 (NCTC13766_00897) - 840073..840987 (-) 915 WP_006739344.1 neutral zinc metallopeptidase -
  EL133_RS04345 (NCTC13766_00898) rexB 841143..844382 (+) 3240 WP_006739990.1 ATP-dependent nuclease subunit B Machinery gene
  EL133_RS04350 (NCTC13766_00899) rexA 844372..848013 (+) 3642 WP_006740521.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  EL133_RS11570 - 848040..849188 (-) 1149 Protein_849 cobalamin-independent methionine synthase II family protein -

Sequence

Protein


Download         Length: 1079 a.a.        Molecular weight: 124680.30 Da        Isoelectric Point: 6.0625

>NTDB_id=1001671 EL133_RS04345 WP_006739990.1 841143..844382(+) (rexB) [Streptococcus urinalis strain NCTC13766]
MRLIYTDINNDLTHILTDIAYHNAKAGQRVFYIAPNSLSFEKERQVLEHLPEKASFQITVTRFAQLARYLVLNRPVQKTS
LDDTGLSMVFYKALSQLNDSHLKLYGKLKQDAGFIKQLVELYKDLQSSNAQISDLETLENKSKFEDLQLIFAEVNQILLD
GNFDNQSAIDYLIESLETQKLSLSYSDVTLVIDGFTRFSAEEERLVSYLHYHGVSIIIGTYMTEKAYKLSFYGGNIFETS
ISFMRSLSSRFQTKVEYINDHHKTANAFFHFSKTFEALHDFSEIDVVNNQKDDAVLIWQTINQKDEIEQVAKAIREKLYQ
GYRYKDILVLLGDVEAYELQVKVIFDKYDIPYYIGKSESMSQHSLIQFFESLERLKKYNWRREDIMTLLKSQLSTHFDQE
LIDKFNQYLQYADINGFTKFNRTFSYQNQNKYDLEELNRVRQAVVEPLSKLLKVKAQKGSSLLKKLLNYLETIQFAEHFQ
SLSQELNEIELEKQEQVWKVFTTVISEFNLLFSDDTLSIEKALSLIKNGMLAGNYRVVPATIDVVNVKSYDLVEPHTNKF
VFAIGLTASHFPKQVTQHSLLSDEERIKLNENLIETSDTHFDVASIENTKKSHFTAVSLFHSASQNLILSSPTVVNESQD
DMSPYLKELTDIGVPVSDKKASLQAINVEDIGNDKALLSRIISINQDKDTFLGDHERTFWAAASRYLRHKLEEENLYILN
RPNHLATKPLSKEVLDIKFPKNEPLNLSSSALTTFHNNQYLYYLQNVLALQEQESIHPDARNHGTYLHFIFENVMKDHST
LTFDQKLENSIEKANTDVRFFQQYQEDAAGRYSLSVLEDIARSTASILRHHQGLKVLKQEKPFSYTIKQKVKVNGYIDRI
DQLDDGSYGVVDYKSSKNTFDIGRFYNGLSPQLVTYLSAIKKDTELNQSNRLFGAMYLHMLEPRLELAKIKEVSVQMIAS
LYQDLTYKGIFLEKEKEHLAGGTYQIKNALYSDEELEILLNYNNFLFEKAAKTIQSGKFLINPYTEDGKSVAGNQLKSIT
RFEADLDFGQARQLIKLPRTQKKENFLKKMQEVEVDDEL

Nucleotide


Download         Length: 3240 bp        

>NTDB_id=1001671 EL133_RS04345 WP_006739990.1 841143..844382(+) (rexB) [Streptococcus urinalis strain NCTC13766]
ATGAGATTAATTTATACCGATATTAACAATGATTTAACTCATATTTTAACTGACATTGCCTATCATAATGCAAAAGCAGG
TCAGCGTGTTTTTTATATTGCACCTAACTCACTTTCTTTTGAAAAAGAAAGACAAGTTCTAGAACATTTACCTGAAAAAG
CATCATTTCAAATAACGGTTACGAGATTTGCCCAATTGGCTAGGTACCTAGTTTTAAATAGACCTGTTCAAAAAACGTCA
TTAGATGATACGGGATTATCGATGGTATTTTATAAAGCATTGAGTCAACTAAATGACTCACATTTGAAATTGTATGGCAA
ACTAAAACAAGATGCTGGATTTATAAAACAATTAGTAGAACTGTATAAAGATTTACAAAGTTCCAATGCTCAAATTTCAG
ATTTGGAGACCTTAGAAAATAAAAGTAAATTTGAAGATTTACAACTGATATTTGCCGAAGTTAATCAGATCTTGTTAGAC
GGTAATTTTGATAATCAATCAGCTATTGATTATTTAATTGAGTCTTTAGAGACTCAAAAATTAAGTCTGTCTTATTCAGA
TGTAACTCTTGTTATTGATGGTTTTACTCGTTTTTCAGCCGAAGAAGAAAGGCTTGTTTCATATTTGCATTATCATGGGG
TATCGATCATTATTGGTACTTATATGACTGAAAAAGCCTATAAATTATCATTTTATGGAGGTAATATTTTTGAAACTTCA
ATCTCATTTATGAGATCATTGTCAAGCCGTTTTCAAACTAAAGTTGAATACATTAATGATCATCACAAAACAGCTAATGC
CTTTTTTCATTTTTCAAAGACTTTTGAAGCTTTACATGACTTCTCAGAAATAGATGTTGTCAATAACCAAAAAGATGATG
CTGTTTTAATTTGGCAAACCATTAATCAAAAAGATGAAATAGAACAAGTAGCTAAAGCAATTCGTGAAAAGCTTTATCAG
GGATATCGCTATAAAGATATATTAGTTCTTCTTGGTGATGTAGAAGCTTACGAATTACAAGTGAAAGTTATTTTTGATAA
ATATGATATTCCTTATTATATTGGCAAATCAGAAAGCATGTCACAACATTCTTTGATTCAATTCTTTGAATCCTTAGAGC
GTCTTAAAAAATATAATTGGCGTCGTGAAGATATCATGACACTTTTGAAATCACAATTATCAACTCATTTTGATCAAGAA
TTAATTGATAAATTCAATCAGTACTTACAATATGCTGATATTAATGGTTTTACCAAATTTAACCGCACATTTAGCTATCA
AAATCAAAATAAATATGATTTAGAAGAGTTAAATCGCGTTCGTCAGGCCGTTGTAGAGCCGCTTTCAAAATTATTAAAAG
TTAAGGCTCAAAAAGGAAGTTCACTCCTTAAAAAATTGTTGAACTACTTAGAAACGATTCAATTTGCGGAACATTTTCAA
TCACTTAGTCAAGAACTAAATGAAATTGAATTAGAAAAACAAGAACAAGTTTGGAAAGTTTTTACGACCGTTATTTCAGA
ATTTAACCTTCTTTTCAGTGATGATACATTATCAATTGAAAAGGCATTATCATTAATAAAAAATGGTATGTTAGCAGGCA
ATTACAGAGTTGTACCTGCAACTATTGATGTGGTTAATGTTAAATCTTATGATTTGGTGGAGCCACATACTAATAAATTT
GTATTTGCTATTGGTTTAACTGCTAGTCATTTTCCTAAACAAGTGACTCAACATTCTTTACTTAGTGATGAAGAAAGAAT
AAAGCTAAATGAAAATCTGATTGAGACATCAGATACACATTTTGACGTTGCAAGTATTGAGAATACAAAGAAAAGTCATT
TTACAGCAGTTTCACTTTTTCATAGTGCAAGTCAAAATCTTATTTTGAGTTCACCAACAGTAGTAAATGAATCACAAGAT
GATATGTCGCCTTACTTGAAGGAACTTACTGACATCGGAGTCCCTGTGAGTGACAAAAAAGCTAGTCTTCAAGCTATAAA
TGTTGAAGATATTGGAAATGATAAAGCTTTATTATCGCGAATCATCTCCATTAATCAGGATAAGGATACTTTTTTAGGTG
ATCATGAAAGAACTTTTTGGGCAGCAGCCAGTCGTTATTTACGACATAAACTAGAAGAAGAAAACCTTTATATTCTAAAC
AGACCAAATCATTTAGCAACAAAACCCTTATCTAAAGAAGTTTTAGATATTAAATTTCCTAAAAATGAGCCCCTAAACTT
ATCGTCATCTGCTTTAACAACATTTCATAATAATCAATATTTGTATTACTTACAAAATGTTTTAGCATTACAGGAACAAG
AAAGTATTCATCCTGATGCACGAAATCATGGTACCTATCTTCATTTTATCTTTGAAAATGTAATGAAAGACCATTCGACG
TTAACTTTTGATCAAAAACTAGAAAATTCAATTGAGAAAGCTAATACTGATGTGCGATTTTTCCAACAATATCAAGAGGA
TGCTGCTGGTCGTTATTCATTGAGTGTTTTAGAGGATATTGCTCGTAGCACTGCTAGTATCTTAAGGCATCATCAAGGTT
TAAAAGTGCTTAAGCAAGAAAAACCATTTTCTTATACCATTAAGCAAAAAGTTAAGGTTAATGGCTATATTGATAGAATT
GACCAATTAGATGATGGTAGTTATGGCGTGGTAGATTATAAGTCAAGTAAAAATACATTTGATATTGGGCGTTTTTATAA
TGGTCTCAGTCCACAATTAGTCACCTATTTATCAGCAATTAAAAAAGATACCGAACTCAATCAGTCTAACAGACTTTTTG
GTGCCATGTATCTTCATATGCTAGAACCTAGATTAGAGTTAGCAAAAATAAAAGAAGTTAGTGTTCAAATGATAGCATCA
CTCTATCAAGACCTAACTTATAAAGGTATTTTTCTTGAAAAAGAAAAAGAACACCTCGCAGGTGGAACCTATCAAATCAA
AAATGCTTTATATAGTGATGAAGAATTAGAAATACTTCTGAATTACAATAATTTTCTTTTTGAAAAAGCTGCAAAAACCA
TACAAAGTGGTAAGTTTTTGATAAACCCTTATACAGAAGATGGAAAATCTGTCGCAGGCAATCAGCTGAAATCAATAACG
CGGTTTGAAGCTGATTTAGACTTTGGACAGGCTAGACAATTAATCAAATTACCAAGAACACAAAAAAAAGAAAACTTTTT
GAAGAAAATGCAAGAAGTTGAGGTCGATGATGAACTATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1025)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KF25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

42.484

99.259

0.422

Multiple sequence alignment