Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABFG87_RS05010 Genome accession   NZ_CP156074
Coordinates   1094791..1096209 (-) Length   472 a.a.
NCBI ID   WP_136771649.1    Uniprot ID   A0A4U0QCI7
Organism   Chitiniphilus eburneus strain YS-30     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1089791..1101209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFG87_RS04975 - 1090403..1091002 (-) 600 WP_136771656.1 flavin prenyltransferase UbiX -
  ABFG87_RS04980 - 1090999..1091544 (-) 546 WP_136771655.1 Gx transporter family protein -
  ABFG87_RS04985 - 1091528..1091896 (-) 369 WP_136771654.1 NusG domain II-containing protein -
  ABFG87_RS04990 rapZ 1091893..1092762 (-) 870 WP_136771653.1 RNase adapter RapZ -
  ABFG87_RS04995 hprK 1092759..1093703 (-) 945 WP_136771652.1 HPr(Ser) kinase/phosphatase -
  ABFG87_RS05000 ptsN 1093830..1094297 (-) 468 WP_136771651.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ABFG87_RS05005 hpf 1094400..1094723 (-) 324 WP_136771650.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ABFG87_RS05010 rpoN/rpoN1 1094791..1096209 (-) 1419 WP_136771649.1 RNA polymerase factor sigma-54 Machinery gene
  ABFG87_RS05015 lptB 1096255..1096986 (-) 732 WP_136771648.1 LPS export ABC transporter ATP-binding protein -
  ABFG87_RS05020 lptA 1096983..1097489 (-) 507 WP_136771647.1 lipopolysaccharide transport periplasmic protein LptA -
  ABFG87_RS05025 lptC 1097470..1098039 (-) 570 WP_136771646.1 LPS export ABC transporter periplasmic protein LptC -
  ABFG87_RS05030 - 1098049..1098564 (-) 516 WP_136771645.1 HAD family hydrolase -
  ABFG87_RS05035 - 1098650..1099627 (-) 978 WP_169307213.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 52492.46 Da        Isoelectric Point: 4.7405

>NTDB_id=1001628 ABFG87_RS05010 WP_136771649.1 1094791..1096209(-) (rpoN/rpoN1) [Chitiniphilus eburneus strain YS-30]
MKQSLQLKLSQQLNLTPQLQQSIKLLQLSTLEFRQEIERYLIENPLLEPGEDRGEGPGEGEGEAPAESSSDDSGSEYGAE
GDDWNWGSGSGGGGGGQGEDDDDFDPASNTARELTLREHLLEQAGLLPLPALDRAVLGLVIDALDDDGFLTQSLQEIFEQ
LPEELVAETGLELEDLSVALARIKQFEPIGVGARDMAEALAMQLRQMPADDIRQLALQLVEGYLDLLAARDYTRLKKALK
CDDAQLKSANALIVGLNPRPAARWAALTPRYVIPDVIVYKARGKWRARLNEAARPRFRVNRMYADILQRSEGGVLARELQ
EARWLVKSVQQRFDTILRVAEAIVARQHAFFEHGEVAMRPMVLRDIAEELELHESTISRVTSQKYLHSPRGLFEFKYFFG
SHVETEAGGECSATAIKAIIKQLIQNEDKNKPLSDSALAETLSRQGIVVARRTVAKYREAMQIAPVNQRKTL

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=1001628 ABFG87_RS05010 WP_136771649.1 1094791..1096209(-) (rpoN/rpoN1) [Chitiniphilus eburneus strain YS-30]
ATGAAGCAGTCCCTTCAGCTCAAGCTGTCGCAGCAGCTCAACCTCACCCCGCAACTGCAGCAATCGATCAAGCTGTTGCA
ACTGTCCACGCTCGAGTTCCGCCAGGAAATAGAACGGTACCTGATCGAAAACCCCTTACTGGAGCCCGGCGAGGATCGCG
GTGAAGGGCCCGGCGAAGGCGAGGGTGAGGCTCCCGCCGAATCATCCAGCGACGACAGCGGCAGCGAGTACGGCGCCGAA
GGCGACGACTGGAACTGGGGCAGCGGTTCGGGTGGTGGCGGTGGCGGGCAAGGCGAGGACGACGATGACTTCGACCCAGC
CTCGAACACCGCGCGCGAACTGACCCTGCGCGAGCACCTGCTGGAACAGGCCGGCCTGCTCCCCCTGCCCGCGCTCGACC
GCGCGGTGCTGGGCCTGGTGATCGATGCGCTGGACGACGATGGTTTCCTCACCCAGTCGCTTCAGGAAATCTTCGAACAG
CTTCCCGAGGAACTCGTCGCCGAAACCGGTCTCGAACTGGAGGATCTGTCGGTTGCCCTGGCCCGCATCAAGCAGTTCGA
ACCGATAGGTGTCGGAGCGCGAGATATGGCCGAGGCACTGGCAATGCAACTGCGCCAGATGCCGGCAGATGACATCCGTC
AACTGGCGCTGCAATTGGTGGAGGGGTATCTCGATTTGCTGGCTGCACGTGACTACACTAGGCTCAAGAAAGCGCTCAAA
TGCGACGACGCGCAGCTCAAGTCGGCCAATGCACTGATCGTCGGACTGAACCCGCGACCGGCCGCCAGATGGGCAGCGCT
GACGCCCCGCTACGTGATCCCGGACGTCATCGTGTACAAGGCGCGGGGCAAGTGGCGGGCAAGGTTGAACGAAGCGGCAC
GACCGCGTTTCAGGGTGAACCGGATGTATGCGGACATTCTGCAACGAAGCGAGGGCGGCGTGCTGGCCAGGGAACTCCAG
GAAGCACGCTGGCTGGTGAAGAGCGTACAACAACGCTTCGATACCATCCTGCGGGTGGCCGAGGCGATTGTGGCAAGACA
GCATGCGTTTTTCGAACATGGGGAAGTGGCGATGCGGCCGATGGTGCTGCGGGATATCGCCGAAGAGCTCGAACTGCACG
AATCGACGATTTCGCGGGTAACGAGCCAAAAGTATCTGCATAGTCCAAGGGGGCTCTTCGAATTCAAGTACTTCTTCGGC
AGCCACGTCGAAACCGAGGCAGGCGGTGAATGCTCGGCGACGGCGATCAAGGCCATCATCAAACAGCTGATCCAGAACGA
GGACAAGAACAAGCCACTTTCAGACAGTGCGCTCGCAGAGACACTGTCGCGGCAAGGGATCGTGGTTGCGCGGCGAACCG
TTGCCAAGTACCGGGAAGCGATGCAGATCGCCCCCGTCAATCAGCGCAAAACCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(315-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U0QCI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50

100

0.54

Multiple sequence alignment