Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABFK62_RS18410 Genome accession   NZ_CP156044
Coordinates   3763261..3763902 (-) Length   213 a.a.
NCBI ID   WP_000201229.1    Uniprot ID   A0A0J0ZM99
Organism   Acinetobacter baumannii strain D13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3758261..3768902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFK62_RS18390 (ABFK62_18390) aroK 3759177..3759746 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ABFK62_RS18395 (ABFK62_18395) pilQ 3759758..3761923 (-) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  ABFK62_RS18400 (ABFK62_18400) pilP 3761986..3762513 (-) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  ABFK62_RS18405 (ABFK62_18405) pilO 3762524..3763264 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABFK62_RS18410 (ABFK62_18410) pilN 3763261..3763902 (-) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  ABFK62_RS18415 (ABFK62_18415) pilM 3763902..3764960 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ABFK62_RS18420 (ABFK62_18420) ponA 3765122..3767677 (+) 2556 WP_000736662.1 penicillin-binding protein PBP1a -
  ABFK62_RS18425 (ABFK62_18425) - 3767695..3768519 (-) 825 WP_001990541.1 putative RNA methyltransferase -
  ABFK62_RS18430 (ABFK62_18430) - 3768522..3768854 (-) 333 WP_000169598.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24063.40 Da        Isoelectric Point: 5.3968

>NTDB_id=1001563 ABFK62_RS18410 WP_000201229.1 3763261..3763902(-) (pilN) [Acinetobacter baumannii strain D13]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKSASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1001563 ABFK62_RS18410 WP_000201229.1 3763261..3763902(-) (pilN) [Acinetobacter baumannii strain D13]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGTCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGCGAAAGTGTGGGGGTCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.038

99.061

0.714

Multiple sequence alignment