Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABFK61_RS17965 | Genome accession | NZ_CP156041 |
| Coordinates | 3758641..3759021 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836914.1 | Uniprot ID | A0A098SJS3 |
| Organism | Acinetobacter baumannii strain D78 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3753641..3764021
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFK61_RS17935 (ABFK61_17935) | kdsB | 3754544..3755305 (+) | 762 | WP_000680692.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ABFK61_RS17940 (ABFK61_17940) | - | 3755317..3756297 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| ABFK61_RS17945 (ABFK61_17945) | - | 3756309..3756650 (+) | 342 | WP_001183027.1 | PilZ domain-containing protein | - |
| ABFK61_RS17950 (ABFK61_17950) | - | 3756668..3757441 (+) | 774 | WP_000497300.1 | TatD family hydrolase | - |
| ABFK61_RS17955 (ABFK61_17955) | - | 3757479..3758087 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABFK61_RS17960 (ABFK61_17960) | - | 3758097..3758651 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABFK61_RS17965 (ABFK61_17965) | xcpV | 3758641..3759021 (+) | 381 | WP_000836914.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABFK61_RS17970 (ABFK61_17970) | xcpW | 3759021..3759722 (+) | 702 | WP_000594579.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABFK61_RS17975 (ABFK61_17975) | gspK | 3759722..3760681 (+) | 960 | WP_000301478.1 | type II secretion system minor pseudopilin GspK | - |
| ABFK61_RS17980 (ABFK61_17980) | - | 3760911..3761507 (+) | 597 | WP_000908449.1 | 6-carboxytetrahydropterin synthase | - |
| ABFK61_RS17985 (ABFK61_17985) | ung | 3761558..3762271 (+) | 714 | WP_001177527.1 | uracil-DNA glycosylase | - |
| ABFK61_RS17990 (ABFK61_17990) | - | 3762268..3763392 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABFK61_RS17995 (ABFK61_17995) | tadA | 3763399..3763902 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 14074.34 Da Isoelectric Point: 10.0341
>NTDB_id=1001517 ABFK61_RS17965 WP_000836914.1 3758641..3759021(+) (xcpV) [Acinetobacter baumannii strain D78]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKRKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKRKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1001517 ABFK61_RS17965 WP_000836914.1 3758641..3759021(+) (xcpV) [Acinetobacter baumannii strain D78]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATC
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGAG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATC
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGAG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |