Detailed information NTG1001518

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: ABFK61_RS17970
• Genome accession: NZ_CP156041
• Coordinates: 3759021..3759722 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain D78
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3754021..3764722

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFK61_RS17935 (ABFK61_17935)	kdsB	3754544..3755305 (+)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ABFK61_RS17940 (ABFK61_17940)	-	3755317..3756297 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
ABFK61_RS17945 (ABFK61_17945)	-	3756309..3756650 (+)	342	WP_001183027.1	PilZ domain-containing protein	-
ABFK61_RS17950 (ABFK61_17950)	-	3756668..3757441 (+)	774	WP_000497300.1	TatD family hydrolase	-
ABFK61_RS17955 (ABFK61_17955)	-	3757479..3758087 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
ABFK61_RS17960 (ABFK61_17960)	-	3758097..3758651 (+)	555	WP_000841373.1	type II secretion system protein	-
ABFK61_RS17965 (ABFK61_17965)	xcpV	3758641..3759021 (+)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
ABFK61_RS17970 (ABFK61_17970)	xcpW	3759021..3759722 (+)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
ABFK61_RS17975 (ABFK61_17975)	gspK	3759722..3760681 (+)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
ABFK61_RS17980 (ABFK61_17980)	-	3760911..3761507 (+)	597	WP_000908449.1	6-carboxytetrahydropterin synthase	-
ABFK61_RS17985 (ABFK61_17985)	ung	3761558..3762271 (+)	714	WP_001177527.1	uracil-DNA glycosylase	-
ABFK61_RS17990 (ABFK61_17990)	-	3762268..3763392 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
ABFK61_RS17995 (ABFK61_17995)	tadA	3763399..3763902 (+)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
ABFK61_RS18000 (ABFK61_18000)	-	3763972..3764415 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=1001518 ABFK61_RS17970 WP_000594579.1 3759021..3759722(+) (xcpW) [Acinetobacter baumannii strain D78]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=1001518 ABFK61_RS17970 WP_000594579.1 3759021..3759722(+) (xcpW) [Acinetobacter baumannii strain D78]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983