Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ABFK61_RS07525 Genome accession   NZ_CP156041
Coordinates   1572977..1573450 (-) Length   157 a.a.
NCBI ID   WP_001214060.1    Uniprot ID   A0A0J0ZM89
Organism   Acinetobacter baumannii strain D78     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1567977..1578450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFK61_RS07510 (ABFK61_07510) pilX 1570606..1571424 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABFK61_RS07515 (ABFK61_07515) pilW 1571421..1572422 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABFK61_RS07520 (ABFK61_07520) pilV 1572423..1572983 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABFK61_RS07525 (ABFK61_07525) fimU 1572977..1573450 (-) 474 WP_001214060.1 GspH/FimT family pseudopilin Machinery gene
  ABFK61_RS07530 (ABFK61_07530) ispH 1573620..1574570 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABFK61_RS07535 (ABFK61_07535) gmk 1574693..1575322 (+) 630 WP_000015937.1 guanylate kinase -
  ABFK61_RS07540 (ABFK61_07540) rpoZ 1575395..1575673 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABFK61_RS07545 (ABFK61_07545) - 1575712..1575842 (+) 131 Protein_1471 hypothetical protein -
  ABFK61_RS07550 (ABFK61_07550) - 1575882..1577987 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16883.50 Da        Isoelectric Point: 8.5355

>NTDB_id=1001486 ABFK61_RS07525 WP_001214060.1 1572977..1573450(-) (fimU) [Acinetobacter baumannii strain D78]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1001486 ABFK61_RS07525 WP_001214060.1 1572977..1573450(-) (fimU) [Acinetobacter baumannii strain D78]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987

Multiple sequence alignment