Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BAMY6639_RS06690 Genome accession   NZ_CP006058
Coordinates   1391021..1391653 (-) Length   210 a.a.
NCBI ID   WP_012118407.1    Uniprot ID   A7Z8M6
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1386021..1396653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS06670 (BAMY6639_07065) - 1387051..1387236 (-) 186 WP_003151806.1 YvzF family protein -
  BAMY6639_RS06675 (BAMY6639_07070) - 1387353..1388795 (+) 1443 WP_020954311.1 spore germination protein -
  BAMY6639_RS06680 (BAMY6639_07075) - 1388770..1389870 (+) 1101 WP_061860857.1 spore germination protein -
  BAMY6639_RS06685 (BAMY6639_07080) - 1389867..1390979 (+) 1113 WP_061860858.1 Ger(x)C family spore germination protein -
  BAMY6639_RS06690 (BAMY6639_07085) vraR 1391021..1391653 (-) 633 WP_012118407.1 response regulator transcription factor Regulator
  BAMY6639_RS06695 (BAMY6639_07090) liaS 1391631..1392713 (-) 1083 WP_003151796.1 two-component system sensor histidine kinase LiaS -
  BAMY6639_RS06700 (BAMY6639_07095) liaF 1392710..1393441 (-) 732 WP_003151794.1 cell wall-active antibiotics response protein LiaF -
  BAMY6639_RS06705 (BAMY6639_07100) - 1393468..1394337 (-) 870 WP_061860859.1 DUF4097 domain-containing protein -
  BAMY6639_RS06710 (BAMY6639_07105) liaH 1394443..1395120 (-) 678 WP_007410057.1 stress responsive protein LiaH -
  BAMY6639_RS06715 (BAMY6639_07110) - 1395134..1395514 (-) 381 WP_007410056.1 protein liaI -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22964.58 Da        Isoelectric Point: 4.7778

>NTDB_id=100147 BAMY6639_RS06690 WP_012118407.1 1391021..1391653(-) (vraR) [Bacillus amyloliquefaciens UMAF6639]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASDGQQGVDLAAELLPDVILMDLVMDGMDGIEATKQICATLNDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIAEAIRAAAKGEPKLESKVAGKVLSRLRHSENQLPHETLTKRELEILCLV
AEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=100147 BAMY6639_RS06690 WP_012118407.1 1391021..1391653(-) (vraR) [Bacillus amyloliquefaciens UMAF6639]
GTGATTCGAGTGTTACTGATTGATGATCATGAAATGGTCAGGATGGGTTTGGCCGCATTTTTAGAAGCACAGCCGGACAT
TGAAGTCGCCGGTGAAGCATCAGACGGGCAGCAGGGCGTCGATCTGGCCGCAGAGCTTTTGCCGGATGTGATTTTAATGG
ACCTTGTCATGGACGGCATGGACGGCATCGAAGCGACAAAACAGATCTGCGCGACACTCAATGACCCGAAAATCATCGTG
CTGACGAGCTTCATTGATGACGACAAAGTGTATCCGGTGATCGAAGCGGGAGCGCTCAGCTATTTGCTGAAAACGTCCAA
GGCGGCAGAAATAGCCGAAGCCATCAGAGCGGCTGCCAAGGGCGAACCGAAGCTTGAATCGAAGGTGGCGGGAAAAGTGC
TGTCAAGGCTGCGCCATTCAGAGAATCAGCTTCCGCATGAAACGCTGACAAAAAGAGAACTGGAAATCCTCTGTCTCGTC
GCGGAAGGCAAGACGAATAAAGAGATTGGTGAAGAGCTGTTCATTACGATTAAAACGGTGAAAACCCACATTACGAATAT
ATTGTCAAAGCTTGATGTCAGTGACCGCACGCAGGCAGCCGTATATGCCCACCGCAATCATCTCGTGACATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z8M6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.481

99.048

0.5
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

100

0.39

Multiple sequence alignment