Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   ABFV68_RS17440 Genome accession   NZ_CP156029
Coordinates   3557475..3557594 (+) Length   39 a.a.
NCBI ID   WP_007407639.1    Uniprot ID   A3KLD5
Organism   Bacillus velezensis strain CH1     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3552475..3562594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV68_RS17420 (ABFV68_17420) - 3552825..3553337 (+) 513 Protein_3369 bacteriocin biosynthesis protein AlbG -
  ABFV68_RS17425 (ABFV68_17425) - 3553344..3554720 (-) 1377 WP_072589671.1 YncE family protein -
  ABFV68_RS17430 (ABFV68_17430) - 3554760..3556115 (-) 1356 WP_072589672.1 YncE family protein -
  ABFV68_RS17435 (ABFV68_17435) rapF 3556346..3557491 (+) 1146 WP_122504249.1 tetratricopeptide repeat protein Regulator
  ABFV68_RS17440 (ABFV68_17440) phrF 3557475..3557594 (+) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ABFV68_RS17445 (ABFV68_17445) - 3557792..3557995 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  ABFV68_RS17450 (ABFV68_17450) - 3558009..3558212 (+) 204 WP_007407641.1 hypothetical protein -
  ABFV68_RS17455 (ABFV68_17455) - 3558247..3558432 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  ABFV68_RS17460 (ABFV68_17460) - 3558575..3558856 (+) 282 WP_007407643.1 hypothetical protein -
  ABFV68_RS17465 (ABFV68_17465) - 3558900..3559412 (+) 513 WP_039253458.1 stage II sporulation protein M -
  ABFV68_RS17470 (ABFV68_17470) - 3560003..3560221 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  ABFV68_RS17475 (ABFV68_17475) speB 3560389..3561261 (-) 873 WP_007614448.1 agmatinase -
  ABFV68_RS17480 (ABFV68_17480) speE 3561320..3562150 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4295.19 Da        Isoelectric Point: 10.0233

>NTDB_id=1001416 ABFV68_RS17440 WP_007407639.1 3557475..3557594(+) (phrF) [Bacillus velezensis strain CH1]
MKLKYKLALTCLAISTVFVSAEIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1001416 ABFV68_RS17440 WP_007407639.1 3557475..3557594(+) (phrF) [Bacillus velezensis strain CH1]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGAAATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment