Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | ABFU25_RS05330 | Genome accession | NZ_CP156000 |
| Coordinates | 1246788..1248182 (-) | Length | 464 a.a. |
| NCBI ID | WP_012437607.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. campestris strain LMG 00569 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1195685..1253124 | 1246788..1248182 | within | 0 |
Gene organization within MGE regions
Location: 1195685..1253124
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFU25_RS05060 (ABFU25_05060) | - | 1197289..1197717 (+) | 429 | WP_145998822.1 | hypothetical protein | - |
| ABFU25_RS05065 (ABFU25_05065) | - | 1198102..1198890 (-) | 789 | WP_145998823.1 | hypothetical protein | - |
| ABFU25_RS05070 (ABFU25_05070) | - | 1198964..1199857 (-) | 894 | WP_145998824.1 | hypothetical protein | - |
| ABFU25_RS05075 (ABFU25_05075) | - | 1200023..1200403 (-) | 381 | WP_172973787.1 | hypothetical protein | - |
| ABFU25_RS05080 (ABFU25_05080) | - | 1200400..1200714 (-) | 315 | WP_100666315.1 | hypothetical protein | - |
| ABFU25_RS05085 (ABFU25_05085) | - | 1200764..1201525 (-) | 762 | WP_100666316.1 | hypothetical protein | - |
| ABFU25_RS05090 (ABFU25_05090) | - | 1201703..1202002 (+) | 300 | WP_230428394.1 | helix-turn-helix domain-containing protein | - |
| ABFU25_RS05095 (ABFU25_05095) | - | 1202071..1202502 (+) | 432 | WP_100666318.1 | hypothetical protein | - |
| ABFU25_RS05100 (ABFU25_05100) | - | 1202507..1202959 (-) | 453 | WP_145998825.1 | hypothetical protein | - |
| ABFU25_RS05105 (ABFU25_05105) | - | 1203162..1204562 (-) | 1401 | WP_100666320.1 | site-specific integrase | - |
| ABFU25_RS05110 (ABFU25_05110) | - | 1205170..1205685 (-) | 516 | WP_100666321.1 | hypothetical protein | - |
| ABFU25_RS05115 (ABFU25_05115) | - | 1205774..1206259 (+) | 486 | WP_145998826.1 | hypothetical protein | - |
| ABFU25_RS05120 (ABFU25_05120) | - | 1206392..1207876 (-) | 1485 | WP_100666322.1 | hypothetical protein | - |
| ABFU25_RS05125 (ABFU25_05125) | - | 1207956..1208921 (-) | 966 | WP_145998827.1 | hypothetical protein | - |
| ABFU25_RS05130 (ABFU25_05130) | - | 1209308..1209571 (+) | 264 | WP_152091501.1 | hypothetical protein | - |
| ABFU25_RS05135 (ABFU25_05135) | - | 1209558..1210055 (-) | 498 | WP_152091502.1 | hypothetical protein | - |
| ABFU25_RS05140 (ABFU25_05140) | - | 1210165..1210695 (-) | 531 | WP_152091503.1 | hypothetical protein | - |
| ABFU25_RS05145 (ABFU25_05145) | - | 1210730..1211542 (-) | 813 | WP_152091504.1 | AbiJ-NTD4 domain-containing protein | - |
| ABFU25_RS05150 (ABFU25_05150) | - | 1211539..1211847 (-) | 309 | WP_152091505.1 | hypothetical protein | - |
| ABFU25_RS05155 (ABFU25_05155) | - | 1212058..1212537 (+) | 480 | WP_152091506.1 | RadC family protein | - |
| ABFU25_RS05160 (ABFU25_05160) | - | 1212606..1212782 (+) | 177 | WP_172973789.1 | hypothetical protein | - |
| ABFU25_RS05165 (ABFU25_05165) | - | 1213002..1213643 (+) | 642 | WP_152091507.1 | DUF1629 domain-containing protein | - |
| ABFU25_RS05170 (ABFU25_05170) | - | 1213679..1216264 (+) | 2586 | WP_218065346.1 | XVIPCD domain-containing protein | - |
| ABFU25_RS05175 (ABFU25_05175) | - | 1216667..1217305 (-) | 639 | WP_232053528.1 | hypothetical protein | - |
| ABFU25_RS05180 (ABFU25_05180) | - | 1217589..1218095 (-) | 507 | WP_230428396.1 | hypothetical protein | - |
| ABFU25_RS05185 (ABFU25_05185) | - | 1218172..1218807 (+) | 636 | WP_230428397.1 | hypothetical protein | - |
| ABFU25_RS05190 (ABFU25_05190) | - | 1218925..1219083 (+) | 159 | WP_172973790.1 | hypothetical protein | - |
| ABFU25_RS05195 (ABFU25_05195) | - | 1219200..1219955 (-) | 756 | WP_274503104.1 | hypothetical protein | - |
| ABFU25_RS05200 (ABFU25_05200) | - | 1219945..1220421 (-) | 477 | WP_152091510.1 | hypothetical protein | - |
| ABFU25_RS05205 (ABFU25_05205) | - | 1220582..1222516 (-) | 1935 | WP_197737888.1 | AAA family ATPase | - |
| ABFU25_RS05210 (ABFU25_05210) | - | 1223091..1223390 (-) | 300 | WP_100666201.1 | conjugal transfer protein TraD | - |
| ABFU25_RS05215 (ABFU25_05215) | - | 1223657..1225252 (+) | 1596 | WP_100666199.1 | MobA/MobL family protein | - |
| ABFU25_RS05220 (ABFU25_05220) | - | 1225305..1225646 (-) | 342 | WP_100666197.1 | hypothetical protein | - |
| ABFU25_RS05225 (ABFU25_05225) | - | 1226340..1226768 (+) | 429 | WP_012437589.1 | hypothetical protein | - |
| ABFU25_RS05230 (ABFU25_05230) | - | 1227011..1227241 (-) | 231 | WP_157382680.1 | hypothetical protein | - |
| ABFU25_RS05235 (ABFU25_05235) | - | 1227305..1227451 (+) | 147 | WP_040940792.1 | hypothetical protein | - |
| ABFU25_RS05240 (ABFU25_05240) | - | 1227636..1228031 (+) | 396 | WP_016945003.1 | hypothetical protein | - |
| ABFU25_RS05245 (ABFU25_05245) | - | 1228122..1228514 (+) | 393 | WP_012437593.1 | H-NS family nucleoid-associated regulatory protein | - |
| ABFU25_RS05250 (ABFU25_05250) | glgX | 1229048..1231177 (-) | 2130 | WP_016945001.1 | glycogen debranching protein GlgX | - |
| ABFU25_RS05255 (ABFU25_05255) | rimK | 1231671..1232546 (+) | 876 | WP_016945000.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| ABFU25_RS05260 (ABFU25_05260) | - | 1232769..1233242 (+) | 474 | WP_012437597.1 | hypothetical protein | - |
| ABFU25_RS05265 (ABFU25_05265) | - | 1233273..1233950 (+) | 678 | WP_003490678.1 | response regulator transcription factor | - |
| ABFU25_RS05270 (ABFU25_05270) | - | 1233943..1235277 (+) | 1335 | WP_012437598.1 | HAMP domain-containing sensor histidine kinase | - |
| ABFU25_RS05275 (ABFU25_05275) | - | 1235420..1235911 (-) | 492 | WP_011038220.1 | GNAT family N-acetyltransferase | - |
| ABFU25_RS05280 (ABFU25_05280) | - | 1235908..1236198 (-) | 291 | WP_011038219.1 | DUF1778 domain-containing protein | - |
| ABFU25_RS05285 (ABFU25_05285) | - | 1236273..1236674 (-) | 402 | WP_012437599.1 | SymE family type I addiction module toxin | - |
| ABFU25_RS05290 (ABFU25_05290) | coaE | 1237206..1237829 (-) | 624 | WP_011038217.1 | dephospho-CoA kinase | - |
| ABFU25_RS05295 (ABFU25_05295) | - | 1237843..1238706 (-) | 864 | WP_012437600.1 | A24 family peptidase | - |
| ABFU25_RS05300 (ABFU25_05300) | pilC | 1238713..1239972 (-) | 1260 | WP_012437601.1 | type II secretion system F family protein | Machinery gene |
| ABFU25_RS05305 (ABFU25_05305) | comP | 1240324..1240737 (+) | 414 | WP_012437602.1 | pilin | Machinery gene |
| ABFU25_RS05310 (ABFU25_05310) | - | 1240956..1242467 (+) | 1512 | WP_256729490.1 | phosphoethanolamine transferase | - |
| ABFU25_RS05315 (ABFU25_05315) | - | 1242478..1243107 (+) | 630 | WP_012437604.1 | hypothetical protein | - |
| ABFU25_RS05320 (ABFU25_05320) | - | 1243077..1244603 (+) | 1527 | WP_016944997.1 | membrane protein | - |
| ABFU25_RS05325 (ABFU25_05325) | pilB | 1244638..1246371 (+) | 1734 | WP_012437606.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABFU25_RS05330 (ABFU25_05330) | pilR | 1246788..1248182 (-) | 1395 | WP_012437607.1 | sigma-54 dependent transcriptional regulator | Regulator |
| ABFU25_RS05335 (ABFU25_05335) | - | 1248391..1250001 (-) | 1611 | WP_012437608.1 | PAS domain-containing sensor histidine kinase | - |
| ABFU25_RS05340 (ABFU25_05340) | sucC | 1250235..1251404 (+) | 1170 | WP_012437609.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ABFU25_RS05345 (ABFU25_05345) | sucD | 1251429..1252304 (+) | 876 | WP_011038208.1 | succinate--CoA ligase subunit alpha | - |
| ABFU25_RS05350 (ABFU25_05350) | - | 1252408..1252818 (+) | 411 | WP_029217117.1 | CopG family ribbon-helix-helix protein | - |
| ABFU25_RS05355 (ABFU25_05355) | - | 1252822..1253124 (+) | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
Sequence
Protein
Download Length: 464 a.a. Molecular weight: 50253.62 Da Isoelectric Point: 6.3587
>NTDB_id=1000991 ABFU25_RS05330 WP_012437607.1 1246788..1248182(-) (pilR) [Xanthomonas campestris pv. campestris strain LMG 00569]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME
Nucleotide
Download Length: 1395 bp
>NTDB_id=1000991 ABFU25_RS05330 WP_012437607.1 1246788..1248182(-) (pilR) [Xanthomonas campestris pv. campestris strain LMG 00569]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAAAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTTCCACCGCTGCGCGAGCGCAGTGGCGATCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCGGCTTCCTCCGCCCTGCCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAACTGGGGATGGAGTAG
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAAAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTTCCACCGCTGCGCGAGCGCAGTGGCGATCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCGGCTTCCTCCGCCCTGCCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAACTGGGGATGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
63.067 |
99.784 |
0.629 |
| pilR | Acinetobacter baumannii strain A118 |
49.138 |
100 |
0.491 |