Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | ABFU56_RS05690 | Genome accession | NZ_CP155998 |
| Coordinates | 1327140..1328534 (-) | Length | 464 a.a. |
| NCBI ID | WP_057671663.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. campestris strain LMG 00574 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1275162..1333476 | 1327140..1328534 | within | 0 |
Gene organization within MGE regions
Location: 1275162..1333476
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFU56_RS05450 (ABFU56_05445) | - | 1275162..1277042 (+) | 1881 | WP_019237331.1 | integrase arm-type DNA-binding domain-containing protein | - |
| ABFU56_RS05455 (ABFU56_05450) | - | 1277227..1277646 (+) | 420 | WP_019237332.1 | hypothetical protein | - |
| ABFU56_RS05460 (ABFU56_05455) | - | 1277679..1278680 (+) | 1002 | WP_011038253.1 | XVIPCD domain-containing protein | - |
| ABFU56_RS05465 (ABFU56_05460) | - | 1278751..1279401 (-) | 651 | WP_011038252.1 | LysR substrate-binding domain-containing protein | - |
| ABFU56_RS05470 (ABFU56_05465) | - | 1279504..1279797 (+) | 294 | WP_011038251.1 | helix-turn-helix domain-containing protein | - |
| ABFU56_RS05475 (ABFU56_05470) | - | 1279825..1280709 (-) | 885 | WP_057671621.1 | LysR family transcriptional regulator | - |
| ABFU56_RS05480 (ABFU56_05475) | - | 1281462..1285487 (-) | 4026 | WP_075287146.1 | helix-turn-helix domain-containing protein | - |
| ABFU56_RS05485 (ABFU56_05480) | - | 1286042..1289305 (-) | 3264 | WP_057671623.1 | ATP-binding protein | - |
| ABFU56_RS05490 (ABFU56_05485) | - | 1289396..1289527 (+) | 132 | Protein_1062 | IS5/IS1182 family transposase | - |
| ABFU56_RS05495 (ABFU56_05490) | - | 1290496..1292034 (+) | 1539 | WP_011038243.1 | MASE1 domain-containing protein | - |
| ABFU56_RS05500 (ABFU56_05495) | - | 1293056..1293703 (+) | 648 | WP_016848927.1 | hypothetical protein | - |
| ABFU56_RS05505 (ABFU56_05500) | - | 1293735..1294874 (+) | 1140 | WP_017117946.1 | type IV secretion system protein | - |
| ABFU56_RS05510 (ABFU56_05505) | - | 1294952..1295491 (+) | 540 | WP_225443876.1 | DUF4189 domain-containing protein | - |
| ABFU56_RS05515 (ABFU56_05510) | - | 1295889..1296419 (+) | 531 | WP_011038239.1 | hypothetical protein | - |
| ABFU56_RS05520 (ABFU56_05515) | - | 1296416..1297075 (+) | 660 | WP_057671625.1 | hypothetical protein | - |
| ABFU56_RS05525 (ABFU56_05520) | - | 1297072..1298454 (+) | 1383 | WP_057671628.1 | DUF6792 domain-containing protein | - |
| ABFU56_RS05530 (ABFU56_05525) | - | 1298558..1298985 (+) | 428 | Protein_1070 | type IV secretion system protein | - |
| ABFU56_RS05535 (ABFU56_05530) | - | 1299494..1300638 (+) | 1145 | WP_274349786.1 | IS3 family transposase | - |
| ABFU56_RS05540 (ABFU56_05535) | - | 1301187..1301666 (+) | 480 | WP_075286085.1 | RadC family protein | - |
| ABFU56_RS05545 (ABFU56_05540) | - | 1301737..1301928 (+) | 192 | WP_221261829.1 | hypothetical protein | - |
| ABFU56_RS05550 (ABFU56_05545) | - | 1302008..1303110 (+) | 1103 | Protein_1074 | IS3-like element IS1404 family transposase | - |
| ABFU56_RS05555 (ABFU56_05550) | - | 1303769..1303924 (+) | 156 | WP_186009287.1 | hypothetical protein | - |
| ABFU56_RS05560 (ABFU56_05555) | - | 1304913..1305338 (+) | 426 | Protein_1076 | XVIPCD domain-containing protein | - |
| ABFU56_RS05565 (ABFU56_05560) | - | 1305366..1305620 (-) | 255 | WP_057671639.1 | hypothetical protein | - |
| ABFU56_RS05570 (ABFU56_05565) | - | 1305887..1306897 (+) | 1011 | Protein_1078 | MobA/MobL family protein | - |
| ABFU56_RS05575 (ABFU56_05570) | - | 1306972..1308080 (+) | 1109 | WP_192012246.1 | IS3 family transposase | - |
| ABFU56_RS05580 (ABFU56_05575) | - | 1308099..1308686 (+) | 588 | Protein_1080 | hypothetical protein | - |
| ABFU56_RS05585 (ABFU56_05580) | - | 1308759..1309127 (-) | 369 | WP_225443877.1 | transcriptional regulator | - |
| ABFU56_RS05590 (ABFU56_05585) | - | 1309135..1309416 (-) | 282 | WP_011348355.1 | DUF6516 family protein | - |
| ABFU56_RS05595 (ABFU56_05590) | - | 1309482..1309823 (-) | 342 | WP_081020748.1 | hypothetical protein | - |
| ABFU56_RS05600 (ABFU56_05595) | - | 1310549..1310899 (+) | 351 | WP_225443878.1 | hypothetical protein | - |
| ABFU56_RS05605 (ABFU56_05600) | - | 1311198..1311428 (-) | 231 | WP_157382680.1 | hypothetical protein | - |
| ABFU56_RS05610 (ABFU56_05605) | - | 1311492..1311638 (+) | 147 | WP_040940792.1 | hypothetical protein | - |
| ABFU56_RS05615 (ABFU56_05610) | - | 1311823..1312218 (+) | 396 | WP_042594933.1 | hypothetical protein | - |
| ABFU56_RS05620 (ABFU56_05615) | - | 1312309..1312701 (+) | 393 | WP_012437593.1 | H-NS family nucleoid-associated regulatory protein | - |
| ABFU56_RS05625 (ABFU56_05620) | glgX | 1313236..1315365 (-) | 2130 | WP_057671651.1 | glycogen debranching protein GlgX | - |
| ABFU56_RS05630 (ABFU56_05625) | rimK | 1315858..1316733 (+) | 876 | WP_016945000.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| ABFU56_RS05635 (ABFU56_05630) | - | 1317383..1318060 (+) | 678 | WP_003490678.1 | response regulator transcription factor | - |
| ABFU56_RS05640 (ABFU56_05635) | - | 1318053..1319387 (+) | 1335 | WP_057671653.1 | HAMP domain-containing sensor histidine kinase | - |
| ABFU56_RS05645 (ABFU56_05640) | - | 1319530..1320021 (-) | 492 | WP_057671655.1 | GNAT family N-acetyltransferase | - |
| ABFU56_RS05650 (ABFU56_05645) | - | 1320018..1320308 (-) | 291 | WP_011038219.1 | DUF1778 domain-containing protein | - |
| ABFU56_RS05655 (ABFU56_05650) | - | 1320383..1320784 (-) | 402 | WP_040940795.1 | SymE family type I addiction module toxin | - |
| ABFU56_RS05660 (ABFU56_05655) | coaE | 1321316..1321939 (-) | 624 | WP_011038217.1 | dephospho-CoA kinase | - |
| ABFU56_RS05665 (ABFU56_05660) | - | 1321953..1322816 (-) | 864 | WP_057671659.1 | A24 family peptidase | - |
| ABFU56_RS05670 (ABFU56_05665) | pilC | 1322823..1324085 (-) | 1263 | WP_057671824.1 | type II secretion system F family protein | Machinery gene |
| ABFU56_RS05675 (ABFU56_05670) | pilA | 1324427..1324855 (+) | 429 | WP_407470115.1 | pilin | Machinery gene |
| ABFU56_RS05680 (ABFU56_05675) | pilB | 1324991..1326721 (+) | 1731 | WP_057671826.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABFU56_RS05690 (ABFU56_05685) | pilR | 1327140..1328534 (-) | 1395 | WP_057671663.1 | sigma-54 dependent transcriptional regulator | Regulator |
| ABFU56_RS05695 (ABFU56_05690) | - | 1328743..1330353 (-) | 1611 | WP_057671664.1 | PAS domain-containing sensor histidine kinase | - |
| ABFU56_RS05700 (ABFU56_05695) | sucC | 1330587..1331756 (+) | 1170 | WP_011038209.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ABFU56_RS05705 (ABFU56_05700) | sucD | 1331781..1332656 (+) | 876 | WP_057671668.1 | succinate--CoA ligase subunit alpha | - |
| ABFU56_RS05710 (ABFU56_05705) | - | 1332760..1333170 (+) | 411 | WP_029217117.1 | CopG family ribbon-helix-helix protein | - |
| ABFU56_RS05715 (ABFU56_05710) | - | 1333174..1333476 (+) | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
Sequence
Protein
Download Length: 464 a.a. Molecular weight: 50279.66 Da Isoelectric Point: 6.5131
>NTDB_id=1000955 ABFU56_RS05690 WP_057671663.1 1327140..1328534(-) (pilR) [Xanthomonas campestris pv. campestris strain LMG 00574]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME
Nucleotide
Download Length: 1395 bp
>NTDB_id=1000955 ABFU56_RS05690 WP_057671663.1 1327140..1328534(-) (pilR) [Xanthomonas campestris pv. campestris strain LMG 00574]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAACTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTACTTACCCAGTCCGCGCTCGA
TGCCTTGAACCAATACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTCGAGCGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCGGTCGTCGACATCGATCCGGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAATTGGGGATGGAGTAG
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAACTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTACTTACCCAGTCCGCGCTCGA
TGCCTTGAACCAATACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTCGAGCGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCGGTCGTCGACATCGATCCGGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAATTGGGGATGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
63.067 |
99.784 |
0.629 |
| pilR | Acinetobacter baumannii strain A118 |
49.353 |
100 |
0.494 |