Detailed information NTG1000364

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABFU20_RS16130
• Genome accession: NZ_CP155963
• Coordinates: 3646505..3647899 (+)
• Length: 464 a.a.
• NCBI ID: WP_043921909.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. raphani strain BR66
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	3647977..3653563	3646505..3647899	flank	78

Gene organization within MGE regions

Location: 3646505..3653563

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFU20_RS16130 (ABFU20_16085)	pilR	3646505..3647899 (+)	1395	WP_043921909.1	sigma-54 dependent transcriptional regulator	Regulator
ABFU20_RS16135 (ABFU20_16090)	-	3647977..3649079 (+)	1103	WP_148263038.1	IS3 family transposase	-
ABFU20_RS16140 (ABFU20_16095)	-	3649298..3649660 (+)	363	WP_148263072.1	hypothetical protein	-
ABFU20_RS16145 (ABFU20_16100)	-	3649605..3650396 (+)	792	WP_202796265.1	toxin	-
ABFU20_RS16150 (ABFU20_16105)	pilB	3650579..3652315 (-)	1737	WP_043921911.1	type IV-A pilus assembly ATPase PilB	Machinery gene

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50279.66 Da
• Isoelectric Point: 6.3588

>NTDB_id=1000364 ABFU20_RS16130 WP_043921909.1 3646505..3647899(+) (pilR) [Xanthomonas campestris pv. raphani strain BR66]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=1000364 ABFU20_RS16130 WP_043921909.1 3646505..3647899(+) (pilR) [Xanthomonas campestris pv. raphani strain BR66]
ATGAACGAAACGAAAAGTGCCTTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAACTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGTGTGGGCAAGGAATTGGTGGCCCGCACCATCCACGAGCAGGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTACCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAAACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAAGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTACTACCGCATCAACGTGATCGAGCTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCACGCAGCCACGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATTCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAGCAACTCGAGCGCGC
CGCGATCCAGAAAGCGCTGGAGGAGAATCGTTGGAACAAGACCAGAACTGCCGCGCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTCAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.067	99.784	0.629
pilR	Acinetobacter baumannii strain A118	48.922	100	0.489