Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | ABFU66_RS05215 | Genome accession | NZ_CP155955 |
| Coordinates | 1239296..1240690 (-) | Length | 464 a.a. |
| NCBI ID | WP_012437607.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. raphani strain bglFP 6809 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1204966..1267592 | 1239296..1240690 | within | 0 |
Gene organization within MGE regions
Location: 1204966..1267592
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFU66_RS05050 (ABFU66_05040) | - | 1205757..1207157 (-) | 1401 | WP_323539561.1 | site-specific integrase | - |
| ABFU66_RS05055 (ABFU66_05045) | - | 1207733..1208179 (-) | 447 | WP_014508731.1 | hypothetical protein | - |
| ABFU66_RS05060 (ABFU66_05050) | - | 1208373..1208597 (+) | 225 | WP_039405436.1 | hypothetical protein | - |
| ABFU66_RS05065 (ABFU66_05055) | - | 1209000..1209479 (+) | 480 | WP_323539562.1 | RadC family protein | - |
| ABFU66_RS05070 (ABFU66_05060) | - | 1209559..1210251 (+) | 693 | WP_235900988.1 | hypothetical protein | - |
| ABFU66_RS05075 (ABFU66_05065) | - | 1210244..1210507 (+) | 264 | WP_407472523.1 | hypothetical protein | - |
| ABFU66_RS05080 | - | 1210552..1211664 (+) | 1113 | WP_407472524.1 | XVIPCD domain-containing protein | - |
| ABFU66_RS05085 (ABFU66_05075) | - | 1211704..1211958 (-) | 255 | WP_151210286.1 | hypothetical protein | - |
| ABFU66_RS05090 (ABFU66_05080) | - | 1212226..1213820 (+) | 1595 | Protein_987 | MobA/MobL family protein | - |
| ABFU66_RS05095 (ABFU66_05085) | - | 1213872..1214213 (-) | 342 | WP_078590293.1 | hypothetical protein | - |
| ABFU66_RS05100 (ABFU66_05090) | - | 1214988..1215266 (+) | 279 | WP_323539563.1 | hypothetical protein | - |
| ABFU66_RS05105 (ABFU66_05095) | - | 1215557..1215787 (-) | 231 | WP_181920809.1 | hypothetical protein | - |
| ABFU66_RS05110 (ABFU66_05100) | - | 1215851..1215997 (+) | 147 | WP_076054137.1 | hypothetical protein | - |
| ABFU66_RS05115 (ABFU66_05105) | - | 1216181..1216576 (+) | 396 | WP_042594933.1 | hypothetical protein | - |
| ABFU66_RS05120 (ABFU66_05110) | - | 1216667..1217059 (+) | 393 | WP_011038224.1 | H-NS family nucleoid-associated regulatory protein | - |
| ABFU66_RS05125 (ABFU66_05115) | glgX | 1217585..1219714 (-) | 2130 | WP_228442816.1 | glycogen debranching protein GlgX | - |
| ABFU66_RS05130 (ABFU66_05120) | rimK | 1220207..1221082 (+) | 876 | WP_116921527.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| ABFU66_RS05135 (ABFU66_05125) | - | 1221732..1222409 (+) | 678 | WP_003490678.1 | response regulator transcription factor | - |
| ABFU66_RS05140 (ABFU66_05130) | - | 1222402..1223736 (+) | 1335 | WP_012437598.1 | HAMP domain-containing sensor histidine kinase | - |
| ABFU66_RS05145 (ABFU66_05135) | - | 1223835..1224090 (-) | 256 | Protein_998 | SymE family type I addiction module toxin | - |
| ABFU66_RS05150 (ABFU66_05140) | coaE | 1224284..1224907 (-) | 624 | WP_225042504.1 | dephospho-CoA kinase | - |
| ABFU66_RS05155 (ABFU66_05145) | - | 1224921..1225784 (-) | 864 | WP_040940797.1 | A24 family peptidase | - |
| ABFU66_RS05160 (ABFU66_05150) | pilC | 1225791..1227053 (-) | 1263 | WP_228442817.1 | type II secretion system F family protein | Machinery gene |
| ABFU66_RS05165 (ABFU66_05155) | pilA/pilAI | 1227404..1227811 (+) | 408 | WP_228442818.1 | pilin | Machinery gene |
| ABFU66_RS05170 (ABFU66_05160) | - | 1227944..1228330 (+) | 387 | WP_373046337.1 | pilin | - |
| ABFU66_RS05175 (ABFU66_05165) | - | 1228389..1230209 (+) | 1821 | WP_323539564.1 | hypothetical protein | - |
| ABFU66_RS05180 (ABFU66_05170) | - | 1230318..1231076 (+) | 759 | WP_228442820.1 | class I SAM-dependent methyltransferase | - |
| ABFU66_RS05185 (ABFU66_05175) | - | 1231222..1232259 (+) | 1038 | WP_323539565.1 | glycosyltransferase family 9 protein | - |
| ABFU66_RS05190 (ABFU66_05180) | - | 1232262..1233104 (-) | 843 | WP_228442822.1 | glycosyltransferase | - |
| ABFU66_RS05195 (ABFU66_05185) | - | 1233098..1234270 (-) | 1173 | WP_228442823.1 | glycosyltransferase | - |
| ABFU66_RS05200 (ABFU66_05190) | - | 1234255..1235118 (-) | 864 | WP_228442824.1 | glycosyltransferase | - |
| ABFU66_RS05205 (ABFU66_05195) | - | 1235168..1236019 (-) | 852 | WP_108133901.1 | glycosyltransferase family 2 protein | - |
| ABFU66_RS05210 (ABFU66_05200) | pilB | 1236175..1237911 (+) | 1737 | WP_040940802.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABFU66_RS05215 (ABFU66_05205) | pilR | 1239296..1240690 (-) | 1395 | WP_012437607.1 | sigma-54 dependent transcriptional regulator | Regulator |
| ABFU66_RS05220 (ABFU66_05210) | - | 1240899..1242509 (-) | 1611 | WP_228442825.1 | PAS domain-containing sensor histidine kinase | - |
| ABFU66_RS05225 (ABFU66_05215) | sucC | 1242743..1243912 (+) | 1170 | WP_323539566.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ABFU66_RS05230 (ABFU66_05220) | sucD | 1243937..1244812 (+) | 876 | WP_011038208.1 | succinate--CoA ligase subunit alpha | - |
| ABFU66_RS05235 (ABFU66_05225) | - | 1244949..1245326 (+) | 378 | WP_019237352.1 | CopG family ribbon-helix-helix protein | - |
| ABFU66_RS05240 (ABFU66_05230) | - | 1245330..1245632 (+) | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| ABFU66_RS05245 (ABFU66_05235) | - | 1245632..1247287 (+) | 1656 | WP_228442826.1 | NAD+ synthase | - |
| ABFU66_RS05250 (ABFU66_05240) | - | 1247281..1248267 (-) | 987 | WP_228442827.1 | hypothetical protein | - |
| ABFU66_RS05255 (ABFU66_05245) | - | 1248718..1249599 (-) | 882 | WP_011038204.1 | outer membrane protein assembly factor BamD | - |
| ABFU66_RS05260 (ABFU66_05250) | rluD | 1249722..1250717 (+) | 996 | WP_228442828.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| ABFU66_RS05265 (ABFU66_05255) | pgeF | 1250719..1251519 (+) | 801 | WP_228442829.1 | peptidoglycan editing factor PgeF | - |
| ABFU66_RS05270 (ABFU66_05260) | - | 1251540..1252046 (+) | 507 | WP_228442830.1 | DUF4166 domain-containing protein | - |
| ABFU66_RS05275 (ABFU66_05265) | - | 1252033..1252452 (+) | 420 | WP_228442831.1 | thiol-disulfide oxidoreductase DCC family protein | - |
| ABFU66_RS05280 (ABFU66_05270) | - | 1253086..1254954 (-) | 1869 | WP_228442832.1 | methyl-accepting chemotaxis protein | - |
| ABFU66_RS05285 (ABFU66_05275) | - | 1255482..1257917 (-) | 2436 | WP_172666251.1 | glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase | - |
| ABFU66_RS05290 (ABFU66_05280) | otsA | 1258873..1260240 (-) | 1368 | WP_014508687.1 | alpha,alpha-trehalose-phosphate synthase (UDP-forming) | - |
| ABFU66_RS05295 (ABFU66_05285) | - | 1260237..1262015 (-) | 1779 | WP_011038196.1 | glycoside hydrolase family 15 protein | - |
| ABFU66_RS05300 (ABFU66_05290) | otsB | 1262065..1262787 (-) | 723 | WP_407472525.1 | trehalose-phosphatase | - |
| ABFU66_RS05305 (ABFU66_05295) | - | 1263680..1266115 (-) | 2436 | WP_228443299.1 | TonB-dependent siderophore receptor | - |
| ABFU66_RS05310 (ABFU66_05300) | - | 1266320..1266793 (+) | 474 | WP_012437623.1 | DUF3574 domain-containing protein | - |
Sequence
Protein
Download Length: 464 a.a. Molecular weight: 50253.62 Da Isoelectric Point: 6.3587
>NTDB_id=1000216 ABFU66_RS05215 WP_012437607.1 1239296..1240690(-) (pilR) [Xanthomonas campestris pv. raphani strain bglFP 6809]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME
Nucleotide
Download Length: 1395 bp
>NTDB_id=1000216 ABFU66_RS05215 WP_012437607.1 1239296..1240690(-) (pilR) [Xanthomonas campestris pv. raphani strain bglFP 6809]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAACTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTAGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCACTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACTATCCACGAGCAAGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTTACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTCGTCGACATCGACCCTGCCTCCTCCGCCCTGCCCTCGTACATCGAGCAACTCGAACGCGC
CGCGATCCAGAAGGCGCTAGAAGAAAACCGCTGGAACAAGACCAAGACTGCCGCGCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTCAAGAAGTTGGGGATGGAGTAG
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAACTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTAGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCACTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACTATCCACGAGCAAGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTTACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTCGTCGACATCGACCCTGCCTCCTCCGCCCTGCCCTCGTACATCGAGCAACTCGAACGCGC
CGCGATCCAGAAGGCGCTAGAAGAAAACCGCTGGAACAAGACCAAGACTGCCGCGCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTCAAGAAGTTGGGGATGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
63.067 |
99.784 |
0.629 |
| pilR | Acinetobacter baumannii strain A118 |
49.138 |
100 |
0.491 |