Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EL092_RS02985 Genome accession   NZ_LR134291
Coordinates   641221..641703 (-) Length   160 a.a.
NCBI ID   WP_008808586.1    Uniprot ID   Q8KQK6
Organism   Streptococcus gordonii strain NCTC7868     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 636221..646703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL092_RS02955 (NCTC7868_00585) recU 636429..637031 (-) 603 WP_012000083.1 Holliday junction resolvase RecU Machinery gene
  EL092_RS02960 (NCTC7868_00586) - 637097..637624 (+) 528 WP_012000084.1 DUF1273 domain-containing protein -
  EL092_RS02965 (NCTC7868_00587) gpsB 637694..638044 (+) 351 WP_012000085.1 cell division regulator GpsB -
  EL092_RS02975 (NCTC7868_00589) - 638585..639751 (+) 1167 WP_012000086.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  EL092_RS02980 (NCTC7868_00590) - 639754..641160 (+) 1407 WP_012000087.1 cell division site-positioning protein MapZ family protein -
  EL092_RS02985 (NCTC7868_00591) luxS 641221..641703 (-) 483 WP_008808586.1 S-ribosylhomocysteine lyase Regulator
  EL092_RS02990 (NCTC7868_00592) - 641935..643542 (+) 1608 WP_008808587.1 ribonuclease Y -
  EL092_RS02995 (NCTC7868_00593) gmk 643657..644283 (+) 627 WP_012000088.1 guanylate kinase -
  EL092_RS03000 (NCTC7868_00594) rpoZ 644308..644622 (+) 315 WP_041789567.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17980.61 Da        Isoelectric Point: 5.2546

>NTDB_id=1000177 EL092_RS02985 WP_008808586.1 641221..641703(-) (luxS) [Streptococcus gordonii strain NCTC7868]
MSKEVIVESFELDHTIVKAPYVRLIGEESGPKGDVISNFDIRLVQPNEDSIPTAGLHTIEHLLAMLIRKRIDGMIDCSPF
GCRTGFHMIMWGRHTPSEIAQVIKSCLEEIAETTTWEDVPGTTIESCGNYKDHSLFSAKEWAKLILKQGISDNAFERHVI

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1000177 EL092_RS02985 WP_008808586.1 641221..641703(-) (luxS) [Streptococcus gordonii strain NCTC7868]
ATGTCTAAAGAAGTTATTGTTGAAAGTTTCGAGCTTGATCACACCATCGTTAAGGCCCCTTATGTACGACTCATTGGAGA
AGAAAGCGGACCAAAAGGAGATGTTATTTCTAATTTTGATATCCGACTTGTCCAGCCCAATGAAGATTCCATTCCAACTG
CAGGACTCCATACCATTGAACACCTGCTAGCTATGCTTATCCGTAAACGCATTGATGGAATGATTGATTGCTCCCCTTTT
GGCTGCCGAACTGGTTTCCATATGATCATGTGGGGACGTCATACCCCATCTGAAATTGCTCAAGTGATCAAATCATGCCT
CGAAGAGATCGCCGAAACCACCACTTGGGAGGACGTCCCAGGAACTACAATTGAGTCTTGCGGAAACTATAAAGATCACA
GCCTCTTTTCTGCCAAGGAGTGGGCAAAGTTAATCCTCAAACAAGGCATCTCAGATAATGCTTTCGAACGCCATGTCATT
TGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8KQK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

38.816

95

0.369