Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EL191_RS05305 Genome accession   NZ_LR134290
Coordinates   1165437..1165877 (-) Length   146 a.a.
NCBI ID   WP_017361297.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina strain NCTC10897     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1160437..1170877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL191_RS05285 (NCTC10897_01061) ileS 1160540..1163374 (+) 2835 WP_041977017.1 isoleucine--tRNA ligase -
  EL191_RS05290 (NCTC10897_01062) lspA 1163367..1163876 (+) 510 WP_013714181.1 signal peptidase II -
  EL191_RS05295 (NCTC10897_01063) - 1163873..1164310 (+) 438 WP_013714182.1 peptidylprolyl isomerase -
  EL191_RS05300 (NCTC10897_01064) ispH 1164447..1165391 (+) 945 WP_041977019.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EL191_RS05305 pilE 1165437..1165877 (-) 441 WP_017361297.1 type IV pilin protein Machinery gene
  EL191_RS05310 (NCTC10897_01065) - 1165877..1170238 (-) 4362 WP_126403456.1 PilC/PilY family type IV pilus protein -
  EL191_RS05315 (NCTC10897_01066) - 1170255..1170578 (-) 324 WP_017361295.1 hypothetical protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15345.44 Da        Isoelectric Point: 8.1046

>NTDB_id=1000102 EL191_RS05305 WP_017361297.1 1165437..1165877(-) (pilE) [Ectopseudomonas mendocina strain NCTC10897]
MRYQRGFTLIELMIAVAIIGVLAAIAYPNYQQYQLKAGRSDGHAKLTQIMQAQERFYSQNQSYTANLGAGGLAFPGIAAN
APIVSDEGRYSIAAQACAAGTPLTRCVRLVATAVGPQAADAQCGNLGLNSQGIKTETGTGTVESCW

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1000102 EL191_RS05305 WP_017361297.1 1165437..1165877(-) (pilE) [Ectopseudomonas mendocina strain NCTC10897]
ATGCGGTACCAGCGCGGTTTTACGCTAATAGAACTTATGATTGCAGTAGCGATAATCGGCGTACTCGCAGCCATTGCTTA
CCCCAACTATCAACAGTACCAGCTCAAGGCAGGACGCTCAGACGGTCACGCAAAGCTGACACAGATCATGCAGGCTCAGG
AGCGTTTCTATTCTCAGAATCAAAGCTATACTGCCAACCTAGGCGCTGGTGGGCTGGCCTTCCCTGGCATTGCAGCTAAC
GCTCCCATCGTTAGCGATGAAGGGCGGTACAGTATTGCCGCTCAGGCATGCGCAGCAGGCACGCCACTAACCCGCTGCGT
GAGACTTGTCGCCACTGCAGTAGGCCCTCAAGCTGCCGACGCGCAATGCGGCAATCTTGGACTTAACAGCCAAGGTATAA
AGACTGAAACTGGCACTGGCACAGTTGAAAGCTGCTGGTAG

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-126)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

38.621

99.315

0.384
  pilE Legionella pneumophila strain ERS1305867

38.621

99.315

0.384