Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABFT92_RS05560 Genome accession   NZ_CP155947
Coordinates   1310736..1312130 (-) Length   464 a.a.
NCBI ID   WP_043877723.1    Uniprot ID   Q6XUJ0
Organism   Xanthomonas campestris pv. campestris strain 0419     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1305736..1317130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT92_RS05535 (ABFT92_05515) pilC 1305982..1307238 (-) 1257 WP_011038215.1 type II secretion system F family protein Machinery gene
  ABFT92_RS05540 (ABFT92_05520) pilE 1307565..1308005 (+) 441 WP_011038214.1 pilin Machinery gene
  ABFT92_RS05545 (ABFT92_05525) - 1308118..1308519 (+) 402 WP_194734302.1 pilin -
  ABFT92_RS05550 (ABFT92_05530) pilB 1308584..1310317 (+) 1734 WP_011038212.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFT92_RS05560 (ABFT92_05540) pilR 1310736..1312130 (-) 1395 WP_043877723.1 sigma-54 dependent transcriptional regulator Regulator
  ABFT92_RS05565 (ABFT92_05545) - 1312339..1313949 (-) 1611 WP_011038210.1 PAS domain-containing sensor histidine kinase -
  ABFT92_RS05570 (ABFT92_05550) sucC 1314183..1315352 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  ABFT92_RS05575 (ABFT92_05555) sucD 1315377..1316252 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ABFT92_RS05580 (ABFT92_05560) - 1316356..1316766 (+) 411 WP_029628876.1 CopG family ribbon-helix-helix protein -
  ABFT92_RS05585 (ABFT92_05565) - 1316770..1317072 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50269.67 Da        Isoelectric Point: 6.3587

>NTDB_id=1000076 ABFT92_RS05560 WP_043877723.1 1310736..1312130(-) (pilR) [Xanthomonas campestris pv. campestris strain 0419]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPLEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1000076 ABFT92_RS05560 WP_043877723.1 1310736..1312130(-) (pilR) [Xanthomonas campestris pv. campestris strain 0419]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCTGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCCGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAACCGGGTCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCAGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACACACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGATCTGTATTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATCCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCGGTCGTCGACATCGATCCGGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAATTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6XUJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.261

99.138

0.627
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment