NTDB

Browse by species

This page lists the natural transformation-associated gene counts (experimentally validated and in silico predicted) per species. Click the hyperlink of your species of interest to browse strains.

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Species	Number of strains	Number of Exp. NT genes	Number of Pred. NT genes
Deinococcus radiodurans	12	16	178
Desulforamulus ruminis	1	0	3
Desulfofundulus kuznetsovii	1	0	3
Desulfotomaculum nigrificans	1	0	3
Desulfosporosinus orientis	1	0	4
Desulfocurvibacter africanus	1	0	2
Desulfitobacterium dehalogenans	1	0	3
Deinococcus gobiensis	1	0	12
Delftia sp. Cs1-4	1	0	12
Dokdonia sp. 4H-3-7-5	1	0	2
Desulfarculus baarsii	1	0	3
Desulfurivibrio alkaliphilus	1	0	3
Deinococcus maricopensis	1	0	11
Desulfobulbus propionicus	1	0	6
Desulfobacca acetoxidans	1	0	3
Deinococcus proteolyticus	1	0	12
Desulfomonile tiedjei	1	0	6
Desulfosporosinus acidiphilus	1	0	4
Dehalococcoides sp. UCH007	1	0	2
Desulfoscipio gibsoniae	1	0	3
Desulfovibrio ferrophilus	1	0	3
Dialister hominis	1	0	1
Desulfosarcina widdelii	1	0	4
Desulfosarcina alkanivorans	1	0	4
Desulfocapsa sulfexigens	1	0	5
Desulfitobacterium dichloroeliminans	1	0	4
Desulfobacula toluolica	1	0	4
Desulfosporosinus meridiei	1	0	4
Dehalobacter sp. DCA	1	0	5
Dehalobacter sp. CF	1	0	5
Deinococcus peraridilitoris	1	0	13
Dactylococcopsis salina	1	0	5
Denitrovibrio acetiphilus	1	0	2
Deferribacter desulfuricans	1	0	4
Dialister massiliensis	1	0	1
Desulfovibrio sp. G11	2	0	2
Dialister succinatiphilus	1	0	1
Duodenibacillus massiliensis	1	0	5
Draconibacterium orientale	2	0	6
Desulfuromonas thiophila	1	0	5
Dermatophilus congolensis	1	0	1
Desulfovibrio piger	2	0	2
Devriesea agamarum	1	0	1
Defluviitoga tunisiensis	1	0	1
Dyadobacter sp. 32	1	0	3
Desulfovibrio sp. 86	1	0	1
Dickeya aquatica	1	0	3
Denitratisoma oestradiolicum	1	0	12
Desulfotalea psychrophila	1	0	4
Desulfitobacterium hafniense	2	0	15
Dyadobacter fermentans	1	0	2
Deinococcus deserti	1	0	11
Desulfomicrobium baculatum	1	0	2
Desulfofarcimen acetoxidans	1	0	4
Dickeya parazeae	1	0	3
Desulfohalobium retbaense	1	0	3
Desulforapulum autotrophicum	1	0	4
Desulfatibacillum aliphaticivorans	1	0	6
Desulforamulus reducens	1	0	3
Deinococcus geothermalis	1	0	13
Dichelobacter nodosus	1	0	8
Desulfosudis oleivorans	1	0	4
Dictyoglomus turgidum	1	0	2
Dictyoglomus thermophilum	1	0	2
Desulfosarcina ovata	2	0	10
Desulfuromonas sp. AOP6	1	0	5
Deinococcus sp. NW-56	1	0	11
Dietzia sp. JS16-p6b	1	0	1
Dickeya sp. Secpp 1600	1	0	3
Devosia sp. I507	1	0	2
Dietzia sp. oral taxon 368	1	0	1
Dokdonia sp. Dokd-P16	1	0	2
Dongshaea marina	1	0	9
Dermabacter jinjuensis	1	0	1
Dehalobacterium formicoaceticum	1	0	4
Delftia sp. HK171	1	0	11
Dialister pneumosintes	1	0	1
Dehalogenimonas formicexedens	1	0	2
Desulforamulus ferrireducens	1	0	3
Desulfobulbus oralis	1	0	4
Deinococcus ficus	1	0	11
Deinococcus irradiatisoli	1	0	10
Dechloromonas sp. HYN0024	1	0	13
Deinococcus sp. AJ005	1	0	14
Dolichospermum sp. UHCC 0315A	1	0	6
Dechloromonas sp. TW-R-39-2	1	0	14
Devosia beringensis	1	0	2
Desulfolutivibrio sulfoxidireducens	2	0	4
Desulfolutivibrio sulfodismutans	1	0	2
Devosia ginsengisoli	1	0	1
Dickeya poaceiphila	1	0	5
Dysosmobacter welbionis	1	0	3
Deinococcus psychrotolerans	1	0	10
Devosia sp. 1566	1	0	2
Dyella sp. M7H15-1	1	0	13
Duncaniella sp. B8	1	0	1
Desulfoglaeba alkanexedens	1	0	4
Diaphorobacter nitroreducens	1	0	12
Dietzia timorensis	1	0	1
Dysgonomonas capnocytophagoides	1	0	2
Desulfoferula mesophila	1	0	3
Demequina sediminis	1	0	1
Desulfitobacterium metallireducens	1	0	5
Dyella japonica	1	0	12
Deinococcus radiopugnans	1	0	13
Dokdonia sp. MED134	1	0	2
Dyella sp. GSA-30	1	0	12
Deinococcus aetherius	1	0	12
Desulfomarina profundi	1	0	1
Dissulfurispira thermophila	1	0	5
Desulfolithobacter dissulfuricans	1	0	6
Desulfuromonas versatilis	1	0	5
Desulfofustis limnaeus	1	0	5
Desulfoluna limicola	1	0	5
Desulfuromonas soudanensis	1	0	5
Deinococcus puniceus	1	0	12
Dokdonia donghaensis	1	0	2
Desulfuromonas sp. DDH964	1	0	5
Dokdonella koreensis	1	0	13
Desulfococcus multivorans	1	0	6
Dietzia psychralcaliphila	1	0	1
Dietzia lutea	1	0	1
Dyella thiooxydans	1	0	13
Desulfomicrobium orale	1	0	2
Denitrobacterium detoxificans	1	0	1
Deinococcus soli (ex Cha et al. 2016)	1	0	12
Dermabacter vaginalis	2	0	2
Devosia sp. A16	1	0	2
Desulfovibrio fairfieldensis	1	0	1
Deinococcus actinosclerus	1	0	12
Deinococcus sp. RM	1	0	10
Deinococcus sp. VB343	1	0	14
Dechloromonas denitrificans	3	0	41
Dactylosporangium matsuzakiense	1	0	1
Dactylosporangium aurantiacum	1	0	2
Dickeya dadantii	6	0	17
Dickeya fangzhongdai	15	0	62
Dehalococcoides mccartyi	28	0	56
Devosia salina	1	0	2
Dactylosporangium roseum	1	0	2
Dactylosporangium fulvum	1	0	2
Diaphorobacter sp. JS3051	1	0	13
Dyella caseinilytica	1	0	13
Delftia acidovorans	7	0	81
Delftia lacustris	6	0	69
Desulfovibrio desulfuricans	4	0	4
Duffyella gerundensis	3	0	9
Diaphorobacter sp. MNS-0	1	0	11
Deefgea tanakiae	1	0	13
Desulfobaculum bizertense	1	0	1
Dyella terrae	1	0	10
Deinococcus sp. KNUC1210	1	0	10
Dehalobacter sp. DCM	1	0	5
Dorea longicatena	3	0	9
Diaphorobacter sp. LI3	1	0	12
Desulfosarcina sp. BuS5	1	0	4
Desulfovibrio subterraneus	1	0	1
Deinococcus taeanensis	1	0	10
Dyadobacter sp. NIV53	1	0	2
Desulfurispirillum indicum	2	0	6
Dissulfurimicrobium hydrothermale	1	0	3
Deinococcus radiophilus	1	0	11
Dermatobacter hominis	1	0	1
Devosia sp. SL43	1	0	2
Dactylosporangium vinaceum	1	0	1
Desulfosediminicola flagellatus	1	0	4
Diaphorobacter sp. HDW4A	1	0	11
Diaphorobacter sp. HDW4B	1	0	12
Desulfosediminicola ganghwensis	1	0	3
Desulfopila sp. IMCC35008	1	0	4
Dickeya dianthicola	16	0	61
Dolichospermum flos-aquae	1	0	6
Dysgonomonas sp. HDW5B	1	0	2
Dysgonomonas sp. HDW5A	1	0	2
Diaminobutyricimonas sp. LJ205	1	0	1
Dietzia sp. DQ12-45-1b	1	0	1
Dehalobacter restrictus	3	0	15
Draconibacterium halophilum	1	0	3
Delftia sp. WY8	1	0	11
Deinococcus wulumuqiensis	2	0	26
Dickeya solani	15	0	46
Duganella dendranthematis	1	0	12
Dyella telluris	1	0	13
Dermacoccus sp. PAMC28757	1	0	1
Diaphorobacter ruginosibacter	1	0	11
Diaphorobacter aerolatus	1	0	8
Desulfonema magnum	1	0	3
Desulfonema limicola	1	0	3
Devosia sp. MC521	1	0	2
Dehalogenimonas etheniformans	1	0	4
Diaphorobacter sp. JS3050	1	0	9
Dickeya zeae	12	0	43
Defluviicoccus vanus	1	0	2
Desulfobulbus oligotrophicus	1	0	5
Dyadobacter sandarakinus	1	0	3
Deefgea piscis	2	0	28
Dyadobacter chenwenxiniae	1	0	3
Demequina sp. TMPB413	1	0	2
Devosia sp. XK-2	1	0	2
Dickeya ananatis	6	0	16
Dechloromonas aquae	1	0	15
Dermacoccus nishinomiyaensis	2	0	2
Defluviimonas sp. SAOS-178_SWC	1	0	2
Dehalobacter sp. CP	1	0	5
Desulfoscipio sp. XC116	1	0	5
Dolosigranulum savutiense	4	0	19
Duganella zoogloeoides	1	0	12
Domibacillus sp. DTU_2020_1001157_1_SI_ALB_TIR_016	1	0	10
Demequina capsici	2	0	2
Diaphorobacter limosus	1	0	12
Dokdonia sp. R86516	1	0	2
Deinococcus sp. AB2017081	1	0	13
Dactylosporangium sp. AC04546	1	0	2
Delftia sp. DS1230	1	0	11
Deinococcus sonorensis	1	0	10
Dellaglioa sp. P0083	1	0	6
Devosia sp. Naph2	1	0	2
Dolosigranulum pigrum	16	0	69
Desulfovibrio sp. WGS1351	1	0	1
Deinococcus yunweiensis	1	0	11
Desulfurobacterium thermolithotrophum	2	0	5
Desulfovibrio aminophilus	1	0	2
Dickeya oryzae	2	0	7
Dehalogenimonas sp. 4OHTPN	1	0	2
Dyadobacter sp. 676	1	0	3
Dokdonia sp. LLG6352-1	1	0	2
Desulfosarcina variabilis	1	0	5
Dehalobacter sp. TBBPA1	1	0	5
Dickeya chrysanthemi	2	0	6
Dyella sp. BiH032	1	0	13
Dyella aluminiiresistens	1	0	13
Dechloromonas sp. A34	1	0	15
Dorea formicigenerans	3	0	9
Devosia sp. SD17-2	1	0	2
Devosia sp. FJ2-5-3	1	0	3
Deinococcus rubellus	1	0	10
Desulfovibrio mangrovi	1	0	1
Desulfomicrobium sp. ZS1	1	0	2
Dietzia kunjamensis	3	0	3
Duganella sp. BuS-21	1	0	13
Deinococcus sp. QL22	1	0	12
Dinoroseobacter shibae	3	0	6
Dyadobacter chenhuakuii	1	0	3
Dolichospermum heterosporum	1	0	6
Dyadobacter fanqingshengii	1	0	3
Delftia tsuruhatensis	9	0	103
Devosia neptuniae	1	0	2
Dermabacter hominis	1	0	1
Devosia rhizosphaerae	1	0	2
Devosia sp. YIM 151766	1	0	2
Deinococcus altitudinis	1	0	11
Diaphorobacter sp. C33	1	0	11
Deinococcus radiomollis	1	0	14
Desemzia incerta	1	0	8
Defluviitalea saccharophila	1	0	4
Delftia sp. UGAL515B_04	1	0	11
Dactylosporangium sp. NBC_01737	1	0	1
Dickeya lacustris	1	0	2
Denitrificimonas caeni	1	0	16
Diaphorobacter sp. ED-3	1	0	12
Deinococcus aquaticus	1	0	12
Delftia sp. PS-11	1	0	11

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Experimentally validated

Bioinformatically predicted