oriTDB

oriT of wild plasmids    |    oriT of ICEs     |     oriT of vectors     |    oriT of artificial transposons
Full list        experimentalexperimental       in_silicoin_silico             Classification

Classification of oriTs within wild plasmids (Click on the types to view members)

» Classification » oriTs of wild plasmids
Types Conserved nick regions Subtypes Conserved nick regions Typical inverted repeats (IRs)
 P-type YATCCTG|H  P1-subtype YATCCTG|H
GTGAAGAAGGAACACCCGC..GCGGGTGGGCCTACTTCAC
 I-subtype YATCCTG|T GTCGGGGC..GCCCTGAC
GCAATTGTAATAGCGTC..GACGGTATTACAATTGC
 X-subtype TATCCTG|C -
 P6-subtype CATCCTG|T CAAGGGGC..GCCCCTTG
CACGTGGC..GCCATGTG
 Q2-subtype YATCCTG|T GGATTGGCAGGAACATGC..GCATGTGTATGACAATCC
 B/O/K/Z-subtype CATCCTG|T GTCGGGGC..GCCCTGAC
GGGAATGTCTGAGCGAGC..GCGCGGTCCGACATTCCC
 PromA-subtype TATCCTG|C -
 F-type GTRGKGTGT|GG - - GCAAAAAC..GTTTTTGC
 NW-type KGTST|ATAGC  N-subtype GGTGT|ATAGC ATTAGGTGTT..AATACCTAAT
AAAAAA..TTTTTT
GTATTCATGC..GCATGAATAC
 W-subtype TGTCT|ATAGC AAGTCATT..AATGACTT
CGCACC..GGTGCG
CCCAATGCGC..GCGCATTGGG
 Q1-type TAARTGCGCCCT  Q1-subtype TAARTGCG|CCCT CCAGTTTCTC..GAGAAACCGG
 18-subtype AAGTGC|GCCCT ATACGAAGTAAC..GTTACTGCGTAT
 ColRNAI-type CTGG|CTTA - - GTTTCGGGGC..GCCCTGAACC
 pMV158-type TAGTGTG|TTAT - - ACTTTAT..ATAAAGT
ColE1_Lactococcal-type CTTG|CA - - TGCCCATTTTTAT..ATAAAATGGGCA
AAAAGGGGAAAGT..ACTTCCCCCTTTT
ACATTGTAATACAA..TTGTATTACAATGT
 A/C - - - AATTTG..CAAATT
CTAGT..ACTAG
ATTCCA..TGGAAT
AATTCC..GGAATT
 L/M - - - GTTTTTGGAGTACCGCCG..CGGCGGCCGTCCAAAAAC

       Degenerate bases:
      H: A/C/T
      K: G/T
      R: A/G
      S: C/G
      Y: C/T