| Classification of oriTs within wild plasmids (Click on the types to view members) |
| Types | Conserved nick regions | Subtypes | Conserved nick regions | Typical inverted repeats (IRs) |
| P-type | YATCCTG|H | P1-subtype | YATCCTG|H | GTGAAGAAGGAACACCCGC..GCGGGTGGGCCTACTTCAC |
| I-subtype | YATCCTG|T | GTCGGGGC..GCCCTGAC GCAATTGTAATAGCGTC..GACGGTATTACAATTGC |
||
| X-subtype | TATCCTG|C | - | ||
| P6-subtype | CATCCTG|T | CAAGGGGC..GCCCCTTG CACGTGGC..GCCATGTG |
||
| Q2-subtype | YATCCTG|T | GGATTGGCAGGAACATGC..GCATGTGTATGACAATCC | ||
| B/O/K/Z-subtype | CATCCTG|T | GTCGGGGC..GCCCTGAC GGGAATGTCTGAGCGAGC..GCGCGGTCCGACATTCCC |
||
| PromA-subtype | TATCCTG|C | - | ||
| F-type | GTRGKGTGT|GG | - | - | GCAAAAAC..GTTTTTGC |
| NW-type | KGTST|ATAGC | N-subtype | GGTGT|ATAGC | ATTAGGTGTT..AATACCTAAT AAAAAA..TTTTTT GTATTCATGC..GCATGAATAC |
| W-subtype | TGTCT|ATAGC | AAGTCATT..AATGACTT CGCACC..GGTGCG CCCAATGCGC..GCGCATTGGG |
||
| Q1-type | TAARTGCGCCCT | Q1-subtype | TAARTGCG|CCCT | CCAGTTTCTC..GAGAAACCGG |
| 18-subtype | AAGTGC|GCCCT | ATACGAAGTAAC..GTTACTGCGTAT | ||
| ColRNAI-type | CTGG|CTTA | - | - | GTTTCGGGGC..GCCCTGAACC |
| pMV158-type | TAGTGTG|TTAT | - | - | ACTTTAT..ATAAAGT |
| ColE1_Lactococcal-type | CTTG|CA | - | - | TGCCCATTTTTAT..ATAAAATGGGCA AAAAGGGGAAAGT..ACTTCCCCCTTTT ACATTGTAATACAA..TTGTATTACAATGT |
| A/C | - | - | - | AATTTG..CAAATT CTAGT..ACTAG ATTCCA..TGGAAT AATTCC..GGAATT |
| L/M | - | - | - | GTTTTTGGAGTACCGCCG..CGGCGGCCGTCCAAAAAC |
Degenerate bases:
experimental
in_silico