Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1135038..1135148 | Replicon | chromosome |
| Accession | NZ_LC127084 | ||
| Organism | Edwardsiella tarda strain ET-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1135045..1135146 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1135038..1135148 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAMD00131843_RS17330 | 1130474..1131745 | + | 1272 | Protein_1012 | hypothetical protein | - |
| SAMD00131843_RS17485 | 1131749..1134991 | + | 3243 | Protein_1013 | hypothetical protein | - |
| - | 1135038..1135148 | - | 111 | - | - | Antitoxin |
| - | 1135045..1135146 | + | 102 | - | - | Toxin |
| SAMD00131843_RS05320 | 1136162..1136719 | + | 558 | WP_012848483.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| SAMD00131843_RS05325 | 1136807..1137166 | + | 360 | WP_012848484.1 | hypothetical protein | - |
| SAMD00131843_RS05330 | 1137193..1137998 | - | 806 | Protein_1016 | hypothetical protein | - |
| SAMD00131843_RS05335 | 1138071..1138544 | - | 474 | WP_012848486.1 | NifB/NifX family molybdenum-iron cluster-binding protein | - |
| SAMD00131843_RS05340 | 1138555..1138833 | - | 279 | WP_015461422.1 | DUF134 domain-containing protein | - |
| SAMD00131843_RS05345 | 1138891..1139514 | - | 624 | WP_012848489.1 | response regulator transcription factor | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 1093393..1137166 | 43773 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T285373 NZ_LC127084:1135045-1135146 [Edwardsiella tarda]
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
Antitoxin
Download Length: 111 bp
>AT285373 NZ_LC127084:c1135148-1135038 [Edwardsiella tarda]
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
