Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1741162..1741272 | Replicon | chromosome |
| Accession | NC_013508 | ||
| Organism | Edwardsiella tarda EIB202 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1741169..1741270 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1741162..1741272 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ETAE_RS18125 | 1736598..1737869 | + | 1272 | Protein_1538 | hypothetical protein | - |
| ETAE_RS17930 | 1737915..1738586 | + | 672 | Protein_1539 | hypothetical protein | - |
| - | 1741162..1741272 | - | 111 | - | - | Antitoxin |
| - | 1741169..1741270 | + | 102 | - | - | Toxin |
| ETAE_RS07745 (ETAE_1639) | 1742286..1742843 | + | 558 | WP_012848483.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| ETAE_RS07750 (ETAE_1640) | 1742985..1743290 | + | 306 | WP_045475195.1 | Fels-1 prophage-like protein | - |
| ETAE_RS17340 (ETAE_1641) | 1743317..1744122 | - | 806 | Protein_1542 | hypothetical protein | - |
| ETAE_RS07760 (ETAE_1642) | 1744195..1744668 | - | 474 | WP_012848486.1 | NifB/NifX family molybdenum-iron cluster-binding protein | - |
| ETAE_RS07765 (ETAE_1643) | 1744679..1744957 | - | 279 | WP_015461422.1 | DUF134 domain-containing protein | - |
| ETAE_RS07770 (ETAE_1645) | 1745015..1745638 | - | 624 | WP_012848489.1 | response regulator transcription factor | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 1698905..1744957 | 46052 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T24430 NC_013508:1741169-1741270 [Edwardsiella tarda EIB202]
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
Antitoxin
Download Length: 111 bp
>AT24430 NC_013508:c1741272-1741162 [Edwardsiella tarda EIB202]
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
