Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1741162..1741272 Replicon chromosome
Accession NC_013508
Organism Edwardsiella tarda EIB202

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1741169..1741270 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1741162..1741272 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ETAE_RS18125 1736598..1737869 + 1272 Protein_1538 hypothetical protein -
ETAE_RS17930 1737915..1738586 + 672 Protein_1539 hypothetical protein -
- 1741162..1741272 - 111 - - Antitoxin
- 1741169..1741270 + 102 - - Toxin
ETAE_RS07745 (ETAE_1639) 1742286..1742843 + 558 WP_012848483.1 Ail/Lom family outer membrane beta-barrel protein -
ETAE_RS07750 (ETAE_1640) 1742985..1743290 + 306 WP_045475195.1 Fels-1 prophage-like protein -
ETAE_RS17340 (ETAE_1641) 1743317..1744122 - 806 Protein_1542 hypothetical protein -
ETAE_RS07760 (ETAE_1642) 1744195..1744668 - 474 WP_012848486.1 NifB/NifX family molybdenum-iron cluster-binding protein -
ETAE_RS07765 (ETAE_1643) 1744679..1744957 - 279 WP_015461422.1 DUF134 domain-containing protein -
ETAE_RS07770 (ETAE_1645) 1745015..1745638 - 624 WP_012848489.1 response regulator transcription factor -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - - 1698905..1744957 46052


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 102 bp

>T24430 NC_013508:1741169-1741270 [Edwardsiella tarda EIB202]
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT

Antitoxin


Download         Length: 111 bp

>AT24430 NC_013508:c1741272-1741162 [Edwardsiella tarda EIB202]
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References