Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) phd-doc/Doc-RelB
Location 317284..317870 Replicon chromosome
Accession NZ_CP091544
Organism Salmonella enterica strain 1618

Toxin (Protein)


Gene name doc Uniprot ID E8XF70
Locus tag L4414_RS01455 Protein ID WP_001521773.1
Coordinates 317502..317870 (+) Length 123 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID M7SDJ3
Locus tag L4414_RS01450 Protein ID WP_001520924.1
Coordinates 317284..317505 (+) Length 74 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
L4414_RS01425 (312304) 312304..313413 + 1110 WP_000822976.1 high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK -
L4414_RS01430 (313473) 313473..314399 + 927 WP_000003007.1 high-affinity branched-chain amino acid ABC transporter permease LivH -
L4414_RS01435 (314396) 314396..315673 + 1278 WP_000803766.1 branched chain amino acid ABC transporter permease LivM -
L4414_RS01440 (315670) 315670..316437 + 768 WP_000082083.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG -
L4414_RS01445 (316439) 316439..317152 + 714 WP_000416114.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF -
L4414_RS01450 (317284) 317284..317505 + 222 WP_001520924.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
L4414_RS01455 (317502) 317502..317870 + 369 WP_001521773.1 type II toxin-antitoxin system death-on-curing family toxin Toxin
L4414_RS01460 (318129) 318129..319445 + 1317 WP_000624747.1 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB -
L4414_RS01465 (319509) 319509..320396 + 888 WP_000099303.1 sn-glycerol-3-phosphate ABC transporter permease UgpA -
L4414_RS01470 (320393) 320393..321238 + 846 WP_000572196.1 sn-glycerol-3-phosphate ABC transporter permease UgpE -
L4414_RS01475 (321240) 321240..322310 + 1071 WP_000907838.1 sn-glycerol-3-phosphate import ATP-binding protein UgpC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - - 314396..323047 8651


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Fido domain

(24-86)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-49)


Sequences

Toxin        


Download         Length: 123 a.a.        Molecular weight: 13587.92 Da        Isoelectric Point: 7.3190

>T233624 WP_001521773.1 NZ_CP091544:317502-317870 [Salmonella enterica]
MTLQLISAEEIIQFHDRLLRVTPGVTGMPDPGRAEALMYRVLKQIEYEGVTDVWLLAAMHLLAISRGHIFNDGNKRTALF
ITLLFLKRNGISLAANPDFVDMTVDAAAGRLTLEQIAVRLRA

Download         Length: 369 bp

>T233624 NZ_HG999363:c4450612-4450478 [Xanthomonas euroxanthea]
ATGAAGCGTGCAATTGTGCTGCTGGTGCTGTCGGTGTTGTCGGTCGGTATGCTGTCGGGTTGCAACACCGTCGCAGGTGC
CGGCAAGGACGTGCAGGGCGCCGGCGAGAAGGTGGAAGACGCTGCGCGCAAGTAA

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 8152.14 Da        Isoelectric Point: 5.0775

>AT233624 WP_001520924.1 NZ_CP091544:317284-317505 [Salmonella enterica]
MRTVNYSEARQNLAEVLESAVTGGPVTITRRGHKSAVIISAEEFERYQTARMDDEFAAIMAVHGNELRELADK

Download         Length: 222 bp

>AT233624 NZ_HG999363:c4450843-4450691 [Xanthomonas euroxanthea]
ATGAAGCGACTGCTGACACTGATGGTACTGGGCCTGTTTTCGGCCGGCGTGATGACTGGCTGCAACACCATGGCTGGCGC
CGGCAAGGACATGCAGGGCGCGGGCGAGAAGGTCGAGAAGAAGGCCGACAATTGCAGTGACGGTAAGTGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A607IPC3

Antitoxin

Source ID Structure
AlphaFold DB A0A6C6Z871

References