Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | IV | Classification (family/domain) | yfjZ-ypjF/CbtA-CbeA |
Location | 1111217..1111884 | Replicon | chromosome |
Accession | NZ_CP046025 | ||
Organism | Escherichia coli strain C439 |
Toxin (Protein)
Gene name | ypjF | Uniprot ID | Q46953 |
Locus tag | GJH08_RS05300 | Protein ID | WP_001094400.1 |
Coordinates | 1111217..1111546 (-) | Length | 110 a.a. |
Antitoxin (Protein)
Gene name | yfjZ | Uniprot ID | P52141 |
Locus tag | GJH08_RS05305 | Protein ID | WP_000072690.1 |
Coordinates | 1111567..1111884 (-) | Length | 106 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
GJH08_RS05295 | 1106273..1110853 | + | 4581 | WP_010723187.1 | adhesin-like autotransporter YpjA/EhaD | - |
GJH08_RS05300 | 1111217..1111546 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin |
GJH08_RS05305 | 1111567..1111884 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
GJH08_RS05310 | 1111922..1112122 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
GJH08_RS05315 | 1112131..1112613 | - | 483 | WP_001407480.1 | RadC family protein | - |
GJH08_RS05320 | 1112622..1113080 | - | 459 | WP_000211841.1 | antirestriction protein | - |
GJH08_RS05325 | 1113183..1113406 | - | 224 | Protein_1038 | DUF905 family protein | - |
GJH08_RS05330 | 1113978..1115681 | - | 1704 | WP_000896263.1 | hypothetical protein | - |
GJH08_RS05335 | 1115823..1116832 | + | 1010 | Protein_1040 | arsenic transporter | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
inside | Genomic island | - | - | 1101565..1133445 | 31880 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 110 a.a. Molecular weight: 12308.21 Da Isoelectric Point: 7.2761
>T143402 WP_001094400.1 NZ_CP046025:c1111546-1111217 [Escherichia coli]
MNTLPATISQAAKPCLSPVAVWQMLLTRLLEQHYGLTLNDTPFSDETVIKEHIDAGITLADAVNFLVEKYELVRIDHRGF
SWQQQSPYISVVDILRARRSTGLLKTNVK
MNTLPATISQAAKPCLSPVAVWQMLLTRLLEQHYGLTLNDTPFSDETVIKEHIDAGITLADAVNFLVEKYELVRIDHRGF
SWQQQSPYISVVDILRARRSTGLLKTNVK
Download Length: 330 bp
>T143402 NZ_CP061081:600113-600415 [Marinomonas arctica]
ATGGCTAGAACACTTGATAAGTTAATTTCAGATCAGAAGCCTGAAATAGTAAAAAATGCTCGTAAAAAGGCGGATGACAT
GGTGCTTGGCATTCACCTAGCCCAATTACGCGAACGTATGAAAGTCACTCAAGAAGATATAGCGAAAACGCTGGGCGTGA
AGCAACCAACGATTGCGGGAATGGAGCGCAAGGGTCGTGATGTGAAGTTATCTACCTTGAAACGTTATGTTGAAGGTGCT
GGTGGCAAATTAACAGTGAATGTGGAATTGCCAGATGGTAGCCACTATGGGTTTAATTTATAG
ATGGCTAGAACACTTGATAAGTTAATTTCAGATCAGAAGCCTGAAATAGTAAAAAATGCTCGTAAAAAGGCGGATGACAT
GGTGCTTGGCATTCACCTAGCCCAATTACGCGAACGTATGAAAGTCACTCAAGAAGATATAGCGAAAACGCTGGGCGTGA
AGCAACCAACGATTGCGGGAATGGAGCGCAAGGGTCGTGATGTGAAGTTATCTACCTTGAAACGTTATGTTGAAGGTGCT
GGTGGCAAATTAACAGTGAATGTGGAATTGCCAGATGGTAGCCACTATGGGTTTAATTTATAG
Antitoxin
Download Length: 106 a.a. Molecular weight: 11737.27 Da Isoelectric Point: 6.4630
>AT143402 WP_000072690.1 NZ_CP046025:c1111884-1111567 [Escherichia coli]
MSNTTWGLQRDITPRLGARLVQEGNQLHYLADRASITGKFSDAECPKLDVVFPHFISQIESMLTTGELNPRHAQCVTLYH
NGFTCEADTLGSCGYVYIAVYPTQR
MSNTTWGLQRDITPRLGARLVQEGNQLHYLADRASITGKFSDAECPKLDVVFPHFISQIESMLTTGELNPRHAQCVTLYH
NGFTCEADTLGSCGYVYIAVYPTQR
Download Length: 318 bp
>AT143402 NZ_CP061081:599438-599971 [Marinomonas arctica]
ATGTTAAAAATTATCGATGTGGATTGGGTTAAAGATCACACCTTAGCATTAACCTTTAGTGACGGATTTGAGGGTGAGGC
AGACTTGTCAGATTACTTTTTAAAGCAGCCATTTGCTAACGTGAAAGATTTTAAACGCTTTGTTTTAACCTCAGACGGCG
CTTTGAACTGGAATGGCAATGAACTTACCGCCACTACACTAAGAGGCTCGACAAAAGGTGCTTATCAGGTACCCGTCTTG
CGGTTTGATGTTGAGCAAATGGAAGAGGTGATCAAGCAGGCTTCATGGGACTCTATGAAAGAAGGTCGCCCAGATATTTT
GCAAGCCGCTATTCGTTCCTATGTTGAGTTATTTGGGCATGGTGTTGTGATCGCAAGAGCGGGTATTAAAAGCCGAACCA
GTGCTTATCGATCTCTGAAACCTGAAACCAAACCTAACTTTGCCACCTTGGTACAACTCGCTCATGCGGTGATTGAAATT
GCTAAAGAGAGAGTTGGGGAATCGGTGCCAAACTCTGTTACTGTTTCACATTAG
ATGTTAAAAATTATCGATGTGGATTGGGTTAAAGATCACACCTTAGCATTAACCTTTAGTGACGGATTTGAGGGTGAGGC
AGACTTGTCAGATTACTTTTTAAAGCAGCCATTTGCTAACGTGAAAGATTTTAAACGCTTTGTTTTAACCTCAGACGGCG
CTTTGAACTGGAATGGCAATGAACTTACCGCCACTACACTAAGAGGCTCGACAAAAGGTGCTTATCAGGTACCCGTCTTG
CGGTTTGATGTTGAGCAAATGGAAGAGGTGATCAAGCAGGCTTCATGGGACTCTATGAAAGAAGGTCGCCCAGATATTTT
GCAAGCCGCTATTCGTTCCTATGTTGAGTTATTTGGGCATGGTGTTGTGATCGCAAGAGCGGGTATTAAAAGCCGAACCA
GTGCTTATCGATCTCTGAAACCTGAAACCAAACCTAACTTTGCCACCTTGGTACAACTCGCTCATGCGGTGATTGAAATT
GCTAAAGAGAGAGTTGGGGAATCGGTGCCAAACTCTGTTACTGTTTCACATTAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A373F4I3 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | P52141 |