Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | /COG5642-COG5654 |
| Location | 2776291..2777215 | Replicon | chromosome |
| Accession | NC_005126 | ||
| Organism | Photorhabdus luminescens subsp. laumondii TTO1 | ||
Toxin (Protein)
| Gene name | - | Uniprot ID | - |
| Locus tag | plu2358 | Protein ID | 37526260 |
| Coordinates | 2776745..2777215 (+) | Length | 157 a.a. |
Antitoxin (Protein)
| Gene name | - | Uniprot ID | - |
| Locus tag | plu2357 | Protein ID | 37526259 |
| Coordinates | 2776302..2776748 (+) | Length | 149 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PLU_RS11695 (plu2352) | 2771596..2772195 | + | 600 | WP_011146588.1 | lytic polysaccharide monooxygenase | - |
| PLU_RS11700 (plu2353) | 2772416..2773528 | - | 1113 | WP_011146589.1 | class II histone deacetylase | - |
| PLU_RS11705 (plu2355) | 2774021..2774488 | - | 468 | WP_011146591.1 | hypothetical protein | - |
| PLU_RS11710 (plu2356) | 2775303..2776229 | + | 927 | WP_011146592.1 | DNA replication terminus site-binding protein | - |
| PLU_RS11715 (plu2357) | 2776302..2776748 | + | 447 | WP_011146593.1 | type II toxin-antitoxin system antitoxin Xre | Antitoxin |
| PLU_RS11720 (plu2358) | 2776745..2777215 | + | 471 | WP_011146594.1 | type II toxin-antitoxin system NAD+ phosphorylase toxin Res | Toxin |
| PLU_RS11725 (plu2359) | 2777283..2778677 | - | 1395 | WP_011146595.1 | class II fumarate hydratase | - |
| PLU_RS11730 (plu2360) | 2778982..2780154 | + | 1173 | WP_011146596.1 | mannose-6-phosphate isomerase | - |
| PLU_RS11735 (plu2361) | 2780294..2781841 | + | 1548 | WP_011146597.1 | YdgA family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 157 a.a. Molecular weight: 17341.92 Da Isoelectric Point: 5.1801
>T1222 37526260 NC_005126:2776745-2777215 [Photorhabdus laumondii subsp. laumondii TTO1]
VILYRLTRSKYVESAWSGTGAKLYGGRWHNIGRPAVYVATSVSLAVLEVLVHVGDDELLTDFALLSIDIPENQIDILDID
TLPSDWNAPVPSTCTMEIGSEWFEVSHSIGLVVPSAIVPYENNVILNPMAKDFHKYINTVKRLDFGIDSRLVKAKK
VILYRLTRSKYVESAWSGTGAKLYGGRWHNIGRPAVYVATSVSLAVLEVLVHVGDDELLTDFALLSIDIPENQIDILDID
TLPSDWNAPVPSTCTMEIGSEWFEVSHSIGLVVPSAIVPYENNVILNPMAKDFHKYINTVKRLDFGIDSRLVKAKK
Download Length: 471 bp
>T1222 NC_005126:2776745-2777215 [Photorhabdus laumondii subsp. laumondii TTO1]
GTGATCTTATACCGACTTACCCGTTCAAAATATGTCGAATCAGCATGGAGTGGTACAGGAGCAAAGTTATATGGTGGCCG
TTGGCACAATATAGGAAGACCCGCAGTTTATGTAGCCACTTCAGTTTCTCTTGCTGTGCTAGAAGTACTTGTTCATGTCG
GAGATGATGAACTTCTCACTGATTTTGCTTTGTTAAGTATCGACATCCCTGAAAACCAAATTGATATTTTAGACATTGAT
ACATTACCTTCTGATTGGAATGCTCCCGTACCTTCTACTTGCACAATGGAAATAGGCAGTGAATGGTTCGAGGTTAGTCA
TTCTATTGGCCTGGTAGTTCCCTCTGCCATTGTCCCCTACGAAAATAACGTCATTTTGAATCCTATGGCGAAAGATTTTC
ATAAATATATAAACACGGTTAAACGCTTGGATTTTGGCATTGATTCCCGTTTAGTAAAGGCAAAAAAATAA
GTGATCTTATACCGACTTACCCGTTCAAAATATGTCGAATCAGCATGGAGTGGTACAGGAGCAAAGTTATATGGTGGCCG
TTGGCACAATATAGGAAGACCCGCAGTTTATGTAGCCACTTCAGTTTCTCTTGCTGTGCTAGAAGTACTTGTTCATGTCG
GAGATGATGAACTTCTCACTGATTTTGCTTTGTTAAGTATCGACATCCCTGAAAACCAAATTGATATTTTAGACATTGAT
ACATTACCTTCTGATTGGAATGCTCCCGTACCTTCTACTTGCACAATGGAAATAGGCAGTGAATGGTTCGAGGTTAGTCA
TTCTATTGGCCTGGTAGTTCCCTCTGCCATTGTCCCCTACGAAAATAACGTCATTTTGAATCCTATGGCGAAAGATTTTC
ATAAATATATAAACACGGTTAAACGCTTGGATTTTGGCATTGATTCCCGTTTAGTAAAGGCAAAAAAATAA
Antitoxin
Download Length: 149 a.a. Molecular weight: 16466.92 Da Isoelectric Point: 10.4604
>AT1222 37526259 NC_005126:2776302-2776748 [Photorhabdus laumondii subsp. laumondii TTO1]
MRVFTPSHKVQSNPLWRTVGFPSSSGPHLNAILNEGLPVTIVDKIQNWSTFGKGDILRIAGIQIRSYSRRCSGKGKFTAD
ESQRIARFVRVMDHAVDLFNGDKDKAAQWMKRPIRGLGYVTPESMLDTESGALDVMNLIGRIEHGIVS
MRVFTPSHKVQSNPLWRTVGFPSSSGPHLNAILNEGLPVTIVDKIQNWSTFGKGDILRIAGIQIRSYSRRCSGKGKFTAD
ESQRIARFVRVMDHAVDLFNGDKDKAAQWMKRPIRGLGYVTPESMLDTESGALDVMNLIGRIEHGIVS
Download Length: 447 bp
>AT1222 NC_005126:2776302-2776748 [Photorhabdus laumondii subsp. laumondii TTO1]
ATGCGAGTTTTTACACCAAGCCACAAAGTCCAGAGTAACCCACTTTGGCGAACAGTTGGTTTCCCATCAAGCAGTGGGCC
ACATTTGAATGCAATATTAAATGAAGGGTTACCAGTCACTATAGTTGATAAAATACAAAACTGGTCAACGTTCGGTAAAG
GGGATATTTTGCGGATTGCAGGTATCCAAATACGCAGTTATTCAAGACGCTGTTCAGGTAAAGGTAAATTTACTGCTGAT
GAAAGTCAGCGCATTGCTCGGTTTGTACGTGTCATGGACCATGCTGTAGATTTATTTAATGGTGACAAAGATAAAGCAGC
TCAATGGATGAAGCGACCTATCCGGGGTTTAGGATACGTAACGCCTGAATCAATGCTCGATACAGAAAGTGGAGCGCTAG
ATGTCATGAATCTCATCGGCAGGATTGAACACGGAATTGTATCGTGA
ATGCGAGTTTTTACACCAAGCCACAAAGTCCAGAGTAACCCACTTTGGCGAACAGTTGGTTTCCCATCAAGCAGTGGGCC
ACATTTGAATGCAATATTAAATGAAGGGTTACCAGTCACTATAGTTGATAAAATACAAAACTGGTCAACGTTCGGTAAAG
GGGATATTTTGCGGATTGCAGGTATCCAAATACGCAGTTATTCAAGACGCTGTTCAGGTAAAGGTAAATTTACTGCTGAT
GAAAGTCAGCGCATTGCTCGGTTTGTACGTGTCATGGACCATGCTGTAGATTTATTTAATGGTGACAAAGATAAAGCAGC
TCAATGGATGAAGCGACCTATCCGGGGTTTAGGATACGTAACGCCTGAATCAATGCTCGATACAGAAAGTGGAGCGCTAG
ATGTCATGAATCTCATCGGCAGGATTGAACACGGAATTGTATCGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| T3484 | Yersinia enterocolitica subsp. enterocolitica 8081 |
46.053 |
100 |
0.461 |
| T10044 | Pseudomonas resinovorans NBRC 106553 |
37.255 |
100 |
0.393 |
| T307 | Pseudomonas putida KT2440 |
36.601 |
100 |
0.386 |
| T10145 | Sphingobium sp. YBL2 |
35 |
89.744 |
0.314 |
Multiple sequence alignment
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT3484 | Yersinia enterocolitica subsp. enterocolitica 8081 |
50.676 |
100 |
0.507 |
Multiple sequence alignment
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|
References
(1) Ragnhild Bager Skjerning et al. (2019) The RES domain toxins of RES-Xre toxin-antitoxin modules induce cell stasis by degrading NAD+. Molecular Microbiology 111(1):221-236. [PubMed:30315706]