TAfinder detailed results

Overview

Job ID wrVbGpMxFf
Sequence name NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome
Predicted type II

Toxin (Protein)


Predicted family yhaV (T1047) Predicted domain Toxin_YhaV (YhaV)
Locus tag orf587 Length 154 a.a.
Coordinates 611959..612423 (-)

Antitoxin (Protein)


Predicted family prlF (AT1047) Predicted domain PrlF_antitoxin (PrlF)
Locus tag orf588 Length 111 a.a.
Coordinates 612423..612758 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
orf581 606960..607394 - 435 ORF581 Predicted ORF by PRODIGAL Version 1.20 -
orf582 607412..608290 - 879 ORF582 Predicted ORF by PRODIGAL Version 1.20 -
orf583 608280..609059 - 780 ORF583 Predicted ORF by PRODIGAL Version 1.20 -
orf584 609070..609543 - 474 ORF584 Predicted ORF by PRODIGAL Version 1.20 -
orf585 609566..610846 - 1281 ORF585 Predicted ORF by PRODIGAL Version 1.20 -
orf586 611095..611904 + 810 ORF586 Predicted ORF by PRODIGAL Version 1.20 -
orf587 611959..612423 - 465 ORF587 Predicted ORF by PRODIGAL Version 1.20 Toxin
orf588 612423..612758 - 336 ORF588 Predicted ORF by PRODIGAL Version 1.20 Antitoxin
orf589 612907..614478 - 1572 ORF589 Predicted ORF by PRODIGAL Version 1.20 -
orf590 614853..616187 + 1335 ORF590 Predicted ORF by PRODIGAL Version 1.20 -
orf591 616203..616973 + 771 ORF591 Predicted ORF by PRODIGAL Version 1.20 -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin

Toxin_YhaV (YhaV) (E-value: 2.7e-55, Score:184.3)

(1-137)

Antitoxin

PrlF_antitoxin (PrlF) (E-value: 6e-39, Score:130.5)

(1-99)

PRK09974 (PrlF) (E-value: 2.1e-25, Score:87)

(4-108)

COG2002 (AbrB) (E-value: 1.7e-15, Score:55.2)

(3-100)

smart00966 (AbrB) (E-value: 4.6e-05, Score:21.5)

(5-34)

TIGR01439 (AbrB) (E-value: 0.014, Score:13.2)

(7-33)

smart00966 (AbrB) (E-value: 480, Score:-1)

(15-40)


Sequences

Toxin        


Download         Length: 154 a.a.        Molecular weight: 17807.17 Da        Isoelectric Point: 9.4947

>ORF587 TA_8 Toxin
MDFPQRVNGWALYAHPCFQETYDALVAEVETLKGKDPENYQRKAATKLLAVVHKVIEEHI
TVNPSSPAFRHGKSLGSGKNKDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTY
GKKTDAYTVFSKMLKRGHPPADWESLTQETEENH

Download         Length: 465 bp

>ORF587 TA_8 Toxin
TCAATGGTTTTCTTCTGTCTCTTGGGTGAGGCTTTCCCAGTCGGCAGGAGGATGTCCTCT
TTTTAACATTTTGCTGAATACGGTATAGGCATCTGTTTTTTTACCGTAGGTGCGCAGAGT
GTTTTCATCGTTCATCCATCCCAGAATGATGACTTTCTCTTTTTCACTATAACGAAAGAA
GAGACGATAACGACCAGCACCAAATTTTACCCGTGACCAGTCTTTATTTTTCCCAGAGCC
TAACGACTTGCCATGACGGAATGCCGGTGATGATGGATTGACCGTGATATGCTCCTCAAT
CACTTTATGGACTACCGCCAATAACTTTGTGGCGGCTTTTCTCTGATAATTTTCAGGATC
TTTTCCCTTTAATGTCTCGACTTCGGCAACTAAAGCGTCGTAGGTTTCCTGAAAACAGGG
ATGAGCATATAGCGCCCAACCATTAACCCTTTGTGGAAAATCCAT

Antitoxin


Download         Length: 111 a.a.        Molecular weight: 12358.94 Da        Isoelectric Point: 4.8616

>ORF588 TA_8 Antitoxin
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDE
QEDHTMNAFLRFLDADIQNNPQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE

Download         Length: 336 bp

>ORF588 TA_8 Antitoxin
TTATTCGTCGTCGCCAATCTCATCATCAATGTTGACGTCCATGCCAGCGACAAGTTTCTT
TCCTTGTTGAATGTTGAATGGACGTGTTTTTTGCGGGTTGTTCTGGATATCTGCATCCAG
AAAACGCAAAAATGCATTCATAGTATGATCCTCCTGTTCATCTCCCAGTCGGCACATAAA
GACTTGCCCACCAGGCAGAATTTCGTAATGAATGCTGTCCTGGCCTGGCTTCAGTTTTAA
GGCCTCACGCACTGGCGCGGGGATAGTTGTTTGTCCGCGTATCGTGACCTTTGATTCAGT
GGTCAGTACAGCGTGAGAGCGAGCATTAGCGGGCAT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
T1047 Escherichia coli str. K-12 substr. MG1655

98.052

100

0.981
Protein Organism Identities (%) Coverage (%) Ha-value
AT1047 Escherichia coli str. K-12 substr. MG1655

100

100

1
AT10162 Nitrosomonas europaea ATCC 19718

46.809

61.842

0.198
AT78 Mycobacterium tuberculosis H37Rv

52.632

24.359

0.09