TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | vapB (AT4250) | Predicted domain | PF01402 (RHH) |
| Locus tag | orf3142 | Length | 120 a.a. |
| Coordinates | 3317767..3318129 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf3134 | 3313161..3314480 | + | 1320 | ORF3134 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3135 | 3314536..3316176 | - | 1641 | ORF3135 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3136 | 3316202..3316747 | - | 546 | ORF3136 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3137 | 3316932..3317696 | + | 765 | ORF3137 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3138 | 3317767..3318129 | + | 363 | ORF3138 | Predicted ORF by PRODIGAL Version 1.20 | Antitoxin |
| orf3139 | 3318269..3318799 | + | 531 | ORF3139 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3140 | 3319088..3319534 | + | 447 | ORF3140 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3141 | 3319618..3319944 | - | 327 | ORF3141 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3142 | 3319994..3321400 | - | 1407 | ORF3142 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 13873.06 Da Isoelectric Point: 10.4547
>ORF3138 Orphan_TA_73 Antitoxin
MYYGALSIRAEAWLIVSPEVTKIMAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRIN
KRNQLKRDKVRGLKRVELKLNAEAVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV
MYYGALSIRAEAWLIVSPEVTKIMAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRIN
KRNQLKRDKVRGLKRVELKLNAEAVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV
Download Length: 363 bp
>ORF3138 Orphan_TA_73 Antitoxin
ATGTATTATGGCGCGCTATCCATCCGGGCAGAGGCCTGGCTGATTGTTTCCCCCGAAGTC
ACCAAGATCATGGCCAAAGAACAAACGGACCGTACGACATTAGATCTGTTCGCGCACGAG
CGTCGACCGGGACGACCGAAAACTAATCCGCTTTCGCGCGATGAACAGCTGCGTATTAAT
AAACGCAACCAGCTAAAACGCGACAAAGTACGTGGCCTTAAGCGTGTCGAACTGAAGCTG
AACGCGGAAGCTGTCGAGGCGCTGAACGAGCTGGCGGAATCGCGCAATATGAGCCGTAGC
GAACTGATCGAAGAGATGTTAATGCAGCAACTGGCGGCGCTGCGTAGTCAGGGCATCGTT
TAA
ATGTATTATGGCGCGCTATCCATCCGGGCAGAGGCCTGGCTGATTGTTTCCCCCGAAGTC
ACCAAGATCATGGCCAAAGAACAAACGGACCGTACGACATTAGATCTGTTCGCGCACGAG
CGTCGACCGGGACGACCGAAAACTAATCCGCTTTCGCGCGATGAACAGCTGCGTATTAAT
AAACGCAACCAGCTAAAACGCGACAAAGTACGTGGCCTTAAGCGTGTCGAACTGAAGCTG
AACGCGGAAGCTGTCGAGGCGCTGAACGAGCTGGCGGAATCGCGCAATATGAGCCGTAGC
GAACTGATCGAAGAGATGTTAATGCAGCAACTGGCGGCGCTGCGTAGTCAGGGCATCGTT
TAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT4250 | Klebsiella pneumoniae subsp. pneumoniae MGH 78578 |
34.146 |
51.25 |
0.117 |
| AT94 | Mycobacterium tuberculosis H37Rv |
35.897 |
45.882 |
0.117 |