TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | higA (AT127) | Predicted domain | PF01325 (Fe_dep_repress) |
| Locus tag | orf3019 | Length | 155 a.a. |
| Coordinates | 3178259..3178726 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf3011 | 3174354..3175946 | - | 1593 | ORF3011 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3012 | 3176165..3177085 | + | 921 | ORF3012 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3013 | 3177144..3178262 | - | 1119 | ORF3013 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3014 | 3178259..3178726 | - | 468 | ORF3014 | Predicted ORF by PRODIGAL Version 1.20 | Antitoxin |
| orf3015 | 3178912..3179040 | + | 129 | ORF3015 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3016 | 3179312..3180895 | + | 1584 | ORF3016 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3017 | 3180944..3181459 | - | 516 | ORF3017 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3018 | 3181812..3182699 | + | 888 | ORF3018 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3019 | 3182998..3183501 | + | 504 | ORF3019 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 17640.25 Da Isoelectric Point: 6.7664
>ORF3014 Orphan_TA_70 Antitoxin
MSRRAGTPTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLIREVGEARQVDM
AARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESRERHQIVENFLLVLG
VSPEIARRDAEGMEHHVSEETLDAFRLFTQKHGAK
MSRRAGTPTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLIREVGEARQVDM
AARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESRERHQIVENFLLVLG
VSPEIARRDAEGMEHHVSEETLDAFRLFTQKHGAK
Download Length: 468 bp
>ORF3014 Orphan_TA_70 Antitoxin
TCATTTGGCACCGTGTTTCTGGGTAAACAAACGAAAAGCGTCGAGCGTCTCTTCACTAAC
ATGGTGCTCCATGCCTTCCGCGTCGCGACGGGCGATTTCCGGACTGACGCCCAACACCAA
CAAGAAATTTTCGACTATCTGATGTCGCTCGCGGCTTTCCTGCGCCAGCTTCTCTCCTTC
TGCCGTTAAAAACACGCCACGCCAGGGGATCATTTCAATCAGCCCCATGGTTGCCAGCCG
CTTAAGCATTTTAGCCACCGTCGGTTGCGAAACTCCCAGACGAGCAGCCATGTCCACCTG
ACGAGCTTCCCCCACTTCCCTGATCAAGTCAGAAATCAGCTCAACGTAATCATCAATAAG
CTCGCGCCGATGCGCCTCTCTGACCTGGCGGAACCCTTCAACGTGCTCTTCCACGTTCAC
TAACTGCGTCACTTTTTTTGCTGTTGGCGTACCTGCGCGACGACTCAT
TCATTTGGCACCGTGTTTCTGGGTAAACAAACGAAAAGCGTCGAGCGTCTCTTCACTAAC
ATGGTGCTCCATGCCTTCCGCGTCGCGACGGGCGATTTCCGGACTGACGCCCAACACCAA
CAAGAAATTTTCGACTATCTGATGTCGCTCGCGGCTTTCCTGCGCCAGCTTCTCTCCTTC
TGCCGTTAAAAACACGCCACGCCAGGGGATCATTTCAATCAGCCCCATGGTTGCCAGCCG
CTTAAGCATTTTAGCCACCGTCGGTTGCGAAACTCCCAGACGAGCAGCCATGTCCACCTG
ACGAGCTTCCCCCACTTCCCTGATCAAGTCAGAAATCAGCTCAACGTAATCATCAATAAG
CTCGCGCCGATGCGCCTCTCTGACCTGGCGGAACCCTTCAACGTGCTCTTCCACGTTCAC
TAACTGCGTCACTTTTTTTGCTGTTGGCGTACCTGCGCGACGACTCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT127 | Mycobacterium tuberculosis H37Rv |
43.333 |
27.523 |
0.084 |
| AT10169 | Acinetobacter baumannii |
43.333 |
30 |
0.084 |