MGE detailed information
MGE type: Conjugative plasmid MGE length: 90741 bp
Accession: NZ_OX030702 Location: 1..90741 Organism: Escherichia coli isolate 131 Replicon: plasmid P1
Accession: NZ_OX030702 Location: 1..90741 Organism: Escherichia coli isolate 131 Replicon: plasmid P1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ128_RS24800 () | 1..858 | + | 858 | WP_000130646.1 | incFII family plasmid replication initiator RepA | - |
| LQ128_RS24805 () | 1772..2041 | + | 270 | WP_000079943.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| LQ128_RS24810 () | 2041..2319 | + | 279 | WP_244427497.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| LQ128_RS24815 () | 2365..3213 | + | 849 | WP_001058010.1 | 3'-5' exonuclease | - |
| LQ128_RS24820 () | 3330..3614 | + | 285 | Protein_4 | hypothetical protein | - |
| LQ128_RS24825 () | 3629..6634 | - | 3006 | WP_001143775.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| LQ128_RS24830 () | 6796..7353 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| LQ128_RS24835 () | 7536..8396 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| LQ128_RS24840 () | 8654..9103 | - | 450 | Protein_8 | IS91 family transposase ISEc37 | Transposase |
| LQ128_RS24845 () | 9095..9256 | + | 162 | Protein_9 | IS91 family transposase ISEc37 | Transposase |
| LQ128_RS24850 () | 9518..10069 | - | 552 | WP_032239728.1 | hypothetical protein | - |
| LQ128_RS24855 () | 10434..10811 | + | 378 | WP_032239721.1 | ProQ/FINO family protein | - |
| LQ128_RS24860 () | 11206..11445 | + | 240 | WP_061089859.1 | DUF2164 family protein | - |
| LQ128_RS24865 () | 11442..11804 | + | 363 | WP_061089860.1 | hypothetical protein | - |
| LQ128_RS24870 () | 12138..12665 | - | 528 | WP_061089861.1 | DoxX family protein | - |
| LQ128_RS24875 () | 12667..13425 | - | 759 | WP_001181586.1 | DNA-binding domain-containing protein | - |
| LQ128_RS24880 () | 13394..14320 | - | 927 | WP_000989040.1 | DUF692 domain-containing protein | - |
| LQ128_RS24885 () | 14352..14642 | - | 291 | WP_000754125.1 | DUF2282 domain-containing protein | - |
| LQ128_RS24890 () | 14951..15508 | - | 558 | WP_000103553.1 | hypothetical protein | VF |
| LQ128_RS24895 () | 15763..16429 | - | 667 | Protein_19 | hypothetical protein | - |
| LQ128_RS24900 () | 16895..20989 | - | 4095 | WP_142439372.1 | Serine protease EatA | VF |
| LQ128_RS24905 () | 21844..22875 | + | 1032 | Protein_21 | IS3 family transposase | - |
| LQ128_RS24910 () | 23429..23614 | - | 186 | Protein_22 | transposase domain-containing protein | - |
| LQ128_RS24915 () | 23684..23827 | + | 144 | Protein_23 | IS3 family transposase ISKpn38 | Transposase |
| LQ128_RS24920 () | 24198..24806 | - | 609 | WP_000515889.1 | ProQ/FINO family protein | - |
| LQ128_RS24925 () | 25529..25945 | - | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LQ128_RS24930 () | 25942..26172 | - | 231 | WP_001261279.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| LQ128_RS24935 () | 26777..27190 | + | 414 | WP_001581782.1 | hypothetical protein | - |
| LQ128_RS24940 () | 27192..27977 | + | 786 | WP_001581781.1 | site-specific integrase | - |
| LQ128_RS24945 () | 28561..29193 | + | 633 | WP_000312331.1 | ParA family protein | - |
| LQ128_RS24950 () | 29193..29567 | + | 375 | WP_000752652.1 | hypothetical protein | - |
| LQ128_RS24955 () | 29805..30779 | + | 975 | WP_001217836.1 | plasmid segregation protein ParM | - |
| LQ128_RS24960 () | 30783..31175 | + | 393 | WP_000272884.1 | plasmid partitioning/stability family protein | - |
| LQ128_RS24965 () | 31856..32758 | + | 903 | WP_230153761.1 | DUF1281 domain-containing protein | - |
| LQ128_RS24970 () | 32755..33066 | + | 312 | WP_032144809.1 | hypothetical protein | - |
| LQ128_RS24975 () | 33142..33825 | + | 684 | WP_074490636.1 | DNA methylase | - |
| LQ128_RS24980 () | 33826..34047 | + | 222 | WP_001104893.1 | hypothetical protein | - |
| LQ128_RS24985 () | 33977..34495 | + | 519 | WP_225089741.1 | DUF1380 family protein | - |
| LQ128_RS24990 () | 34540..35310 | + | 771 | WP_230153756.1 | hypothetical protein | - |
| LQ128_RS24995 () | 35726..36151 | + | 426 | WP_001198875.1 | antirestriction protein | - |
| LQ128_RS25000 () | 36198..36620 | + | 423 | WP_000271692.1 | DUF1380 family protein | - |
| LQ128_RS25005 () | 36617..36808 | + | 192 | WP_001415419.1 | hypothetical protein | - |
| LQ128_RS25010 () | 37780..38010 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| LQ128_RS25015 () | 38062..39423 | + | 1362 | WP_230153757.1 | DUF3560 domain-containing protein | - |
| LQ128_RS25020 () | 39470..40033 | + | 564 | WP_001309257.1 | class I SAM-dependent methyltransferase | - |
| LQ128_RS25025 () | 40119..40568 | - | 450 | Protein_45 | hypothetical protein | - |
| LQ128_RS25030 () | 40870..41397 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| LQ128_RS25035 () | 41455..41688 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| LQ128_RS25040 () | 41749..43713 | + | 1965 | WP_230153758.1 | ParB/RepB/Spo0J family partition protein | - |
| LQ128_RS25045 () | 43782..44216 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| LQ128_RS25050 () | 44213..44975 | + | 763 | Protein_50 | plasmid SOS inhibition protein A | - |
| - () | 44944..45168 | + | 225 | NuclAT_0 | - | - |
| - () | 44944..45168 | + | 225 | NuclAT_0 | - | - |
| - () | 44944..45168 | + | 225 | NuclAT_0 | - | - |
| - () | 44944..45168 | + | 225 | NuclAT_0 | - | - |
| LQ128_RS25055 () | 44953..45132 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| - | 45101..45166 | - | 66 | - | - | Antitoxin Detail |
| LQ128_RS25060 () | 45154..45303 | + | 150 | Protein_52 | plasmid maintenance protein Mok | - |
| LQ128_RS25065 () | 45245..45370 | + | 126 | WP_096937776.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| LQ128_RS25070 () | 45688..45985 | - | 298 | Protein_54 | hypothetical protein | - |
| LQ128_RS25075 () | 46285..46581 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| LQ128_RS25080 () | 46692..47513 | + | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| LQ128_RS25085 () | 47810..48319 | - | 510 | WP_000759173.1 | hypothetical protein | VF |
| LQ128_RS25090 () | 48733..49116 | + | 384 | WP_001151538.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LQ128_RS25095 () | 49303..49992 | + | 690 | WP_016239105.1 | conjugal transfer transcriptional regulator TraJ | - |
| LQ128_RS25100 () | 50085..50486 | + | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| LQ128_RS25105 () | 50519..50881 | + | 363 | WP_001673167.1 | type IV conjugative transfer system pilin TraA | - |
| LQ128_RS25110 () | 50896..51207 | + | 312 | WP_000012100.1 | type IV conjugative transfer system protein TraL | - |
| LQ128_RS25115 () | 51229..51795 | + | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| LQ128_RS25120 () | 51782..52510 | + | 729 | WP_001230772.1 | type-F conjugative transfer system secretin TraK | - |
| LQ128_RS25125 () | 52510..53961 | + | 1452 | WP_001620787.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| LQ128_RS25130 () | 53951..54517 | + | 567 | WP_000896598.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| LQ128_RS25135 () | 54504..54821 | + | 318 | WP_001057297.1 | conjugal transfer protein TrbD | - |
| LQ128_RS25140 () | 54821..55336 | + | 516 | WP_000809872.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LQ128_RS25145 () | 55471..55692 | + | 222 | WP_001278695.1 | conjugal transfer protein TraR | - |
| LQ128_RS25150 () | 55685..56098 | + | 414 | WP_000549574.1 | hypothetical protein | - |
| LQ128_RS25155 () | 56091..56564 | + | 474 | WP_000549566.1 | hypothetical protein | - |
| LQ128_RS25160 () | 56644..56862 | + | 219 | WP_000556746.1 | hypothetical protein | - |
| LQ128_RS25165 () | 57229..59859 | + | 2631 | WP_032152342.1 | type IV secretion system protein TraC | - |
| LQ128_RS25170 () | 59856..60242 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| LQ128_RS25175 () | 60239..60871 | + | 633 | WP_021534933.1 | type-F conjugative transfer system protein TraW | - |
| LQ128_RS25180 () | 60868..61860 | + | 993 | WP_000830849.1 | conjugal transfer pilus assembly protein TraU | - |
| LQ128_RS25185 () | 61890..62195 | + | 306 | WP_000224418.1 | hypothetical protein | - |
| LQ128_RS25190 () | 62204..62842 | + | 639 | WP_001080251.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LQ128_RS25195 () | 62839..64689 | + | 1851 | WP_142988065.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| LQ128_RS25200 () | 64716..64973 | + | 258 | WP_000864329.1 | conjugal transfer protein TrbE | - |
| LQ128_RS25205 () | 64966..65709 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| LQ128_RS25210 () | 65723..66067 | + | 345 | WP_000556796.1 | conjugal transfer protein TrbA | - |
| LQ128_RS25215 () | 66186..66470 | + | 285 | WP_000624194.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LQ128_RS25220 () | 66457..67002 | + | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| LQ128_RS25225 () | 66932..67279 | + | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| LQ128_RS25230 () | 67260..67652 | + | 393 | WP_000660700.1 | F-type conjugal transfer protein TrbF | - |
| LQ128_RS25235 () | 67639..69012 | + | 1374 | WP_000944331.1 | conjugal transfer pilus assembly protein TraH | - |
| LQ128_RS25240 () | 69009..71855 | + | 2847 | WP_050009856.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| LQ128_RS25245 () | 71852..72361 | + | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| LQ128_RS25250 () | 72375..73106 | + | 732 | WP_042018826.1 | conjugal transfer complement resistance protein TraT | - |
| LQ128_RS25255 () | 73309..74046 | + | 738 | WP_000199905.1 | hypothetical protein | - |
| LQ128_RS25260 () | 74097..75464 | + | 1368 | Protein_92 | type IV conjugative transfer system coupling protein TraD | - |
| LQ128_RS25265 () | 75495..77108 | - | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| LQ128_RS25270 () | 77139..77489 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| LQ128_RS25275 () | 77486..77911 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| LQ128_RS25280 () | 77996..78826 | + | 831 | Protein_96 | type IV secretion system DNA-binding domain-containing protein | - |
| LQ128_RS25285 () | 78826..84096 | + | 5271 | WP_230153759.1 | Multifunctional conjugation protein TraI | Relaxase |
| LQ128_RS25290 () | 84116..84856 | + | 741 | WP_230153760.1 | conjugal transfer pilus acetylase TraX | - |
| LQ128_RS25295 () | 84911..85468 | + | 558 | WP_000139329.1 | fertility inhibition protein FinO | - |
| LQ128_RS25300 () | 85620..85823 | + | 204 | WP_001336517.1 | hypothetical protein | - |
| LQ128_RS25305 () | 86565..87026 | + | 462 | WP_019842128.1 | thermonuclease family protein | - |
| LQ128_RS25310 () | 87295..87513 | + | 219 | WP_113365647.1 | hypothetical protein | - |
| LQ128_RS25315 () | 87666..88103 | + | 438 | WP_000872609.1 | hypothetical protein | - |
| - () | 88198..88237 | - | 40 | NuclAT_1 | - | - |
| - () | 88198..88237 | - | 40 | NuclAT_1 | - | - |
| - () | 88198..88237 | - | 40 | NuclAT_1 | - | - |
| - () | 88198..88237 | - | 40 | NuclAT_1 | - | - |
| LQ128_RS25320 () | 88283..89652 | + | 1370 | WP_087522250.1 | IS3 family transposase IS150 | Transposase |
| LQ128_RS25325 () | 89748..89897 | + | 150 | WP_001336447.1 | Hok/Gef family protein | - |
| LQ128_RS25330 () | 90182..90439 | + | 258 | WP_000084404.1 | replication regulatory protein RepA | - |
| LQ128_RS25335 () | 90544..90729 | + | 186 | WP_012615301.1 | plasmid copy control protein CopA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|