Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/RelE-RHH |
Location | 1772..2319 | Replicon | plasmid P1 |
Accession | NZ_OX030702 | ||
Organism | Escherichia coli isolate 131 |
Toxin (Protein)
Gene name | parE | Uniprot ID | - |
Locus tag | LQ128_RS24810 | Protein ID | WP_244427497.1 |
Coordinates | 2041..2319 (+) | Length | 93 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | Q5JBQ7 |
Locus tag | LQ128_RS24805 | Protein ID | WP_000079943.1 |
Coordinates | 1772..2041 (+) | Length | 90 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LQ128_RS24800 (1) | 1..858 | + | 858 | WP_000130646.1 | incFII family plasmid replication initiator RepA | - |
LQ128_RS24805 (1772) | 1772..2041 | + | 270 | WP_000079943.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin |
LQ128_RS24810 (2041) | 2041..2319 | + | 279 | WP_244427497.1 | type II toxin-antitoxin system toxin YacB | Toxin |
LQ128_RS24815 (2365) | 2365..3213 | + | 849 | WP_001058010.1 | 3'-5' exonuclease | - |
LQ128_RS24820 (3330) | 3330..3614 | + | 285 | Protein_4 | hypothetical protein | - |
LQ128_RS24825 (3629) | 3629..6634 | - | 3006 | WP_001143775.1 | Tn3-like element Tn3 family transposase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Conjugative plasmid | blaTEM-1B | - | 1..90741 | 90741 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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