MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 91748 bp
Accession: NZ_OU659164 Location: 1..91748 Organism: Providencia alcalifaciens strain 2019-04-29292-1-3 isolate 2019-04-29292-1-3 Replicon: plasmid 3
Accession: NZ_OU659164 Location: 1..91748 Organism: Providencia alcalifaciens strain 2019-04-29292-1-3 isolate 2019-04-29292-1-3 Replicon: plasmid 3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO74_RS20095 (NVI2019_OGMBKCAO_04040) | 818..1210 | + | 393 | WP_224051170.1 | Mor transcription activator family protein | - |
| LDO74_RS20100 (NVI2019_OGMBKCAO_04041) | 1453..1911 | - | 459 | WP_282563876.1 | helix-turn-helix transcriptional regulator | - |
| LDO74_RS20105 (NVI2019_OGMBKCAO_04042) | 2642..3673 | + | 1032 | WP_282563875.1 | RepA family replication protein | - |
| LDO74_RS20110 (NVI2019_OGMBKCAO_04043) | 4289..4900 | + | 612 | WP_282563874.1 | ProQ/FINO family protein | - |
| LDO74_RS20115 (NVI2019_OGMBKCAO_04044) | 5101..14037 | - | 8937 | WP_224051166.1 | TcdA/TcdB catalytic glycosyltransferase domain-containing protein | - |
| LDO74_RS20120 (NVI2019_OGMBKCAO_04045) | 14792..15040 | - | 249 | Protein_6 | IS3 family transposase ISYal1 | Transposase |
| LDO74_RS20125 (NVI2019_OGMBKCAO_04046) | 15992..16297 | + | 306 | WP_224051165.1 | ProQ/FINO family protein | - |
| LDO74_RS20130 | 16432..17156 | + | 725 | Protein_8 | hypothetical protein | VF |
| LDO74_RS20135 (NVI2019_OGMBKCAO_04049) | 17328..18287 | + | 960 | WP_224051164.1 | ISNCY family transposase ISRor2 | VF |
| LDO74_RS20140 (NVI2019_OGMBKCAO_04050) | 18697..19278 | + | 582 | WP_036982181.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LDO74_RS20145 (NVI2019_OGMBKCAO_04051) | 19437..19688 | + | 252 | WP_036974972.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| LDO74_RS20150 (NVI2019_OGMBKCAO_04052) | 19678..19959 | + | 282 | WP_036979529.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LDO74_RS20155 (NVI2019_OGMBKCAO_04053) | 20643..21266 | + | 624 | WP_036974649.1 | ParA family partition ATPase | - |
| LDO74_RS20160 (NVI2019_OGMBKCAO_04054) | 21268..21522 | + | 255 | WP_224051163.1 | plasmid partition protein ParG | - |
| LDO74_RS20165 (NVI2019_OGMBKCAO_04055) | 21631..21975 | - | 345 | WP_051420194.1 | plasmid partitioning/stability family protein | - |
| LDO74_RS20170 (NVI2019_OGMBKCAO_04056) | 21975..22943 | - | 969 | WP_036974617.1 | plasmid segregation protein ParM | - |
| LDO74_RS20175 (NVI2019_OGMBKCAO_04057) | 23441..23650 | + | 210 | WP_036979533.1 | hypothetical protein | - |
| LDO74_RS20180 (NVI2019_OGMBKCAO_04058) | 24488..24739 | + | 252 | WP_036954407.1 | hypothetical protein | - |
| LDO74_RS21275 | 24781..25344 | + | 564 | WP_282563873.1 | hypothetical protein | - |
| LDO74_RS20195 (NVI2019_OGMBKCAO_04060) | 25488..26297 | + | 810 | WP_224051160.1 | N-6 DNA methylase | - |
| LDO74_RS20200 (NVI2019_OGMBKCAO_04061) | 26878..27357 | + | 480 | WP_224051159.1 | antirestriction protein | - |
| LDO74_RS20205 (NVI2019_OGMBKCAO_04062) | 28201..28506 | - | 306 | WP_282563872.1 | hypothetical protein | VF |
| LDO74_RS20210 (NVI2019_OGMBKCAO_04063) | 29010..29393 | + | 384 | WP_224051157.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LDO74_RS20215 (NVI2019_OGMBKCAO_04064) | 29402..29728 | + | 327 | WP_282563871.1 | hypothetical protein | - |
| LDO74_RS20220 (NVI2019_OGMBKCAO_04065) | 29854..30588 | + | 735 | WP_282563870.1 | helix-turn-helix transcriptional regulator | - |
| LDO74_RS20225 (NVI2019_OGMBKCAO_04066) | 30605..30796 | + | 192 | WP_224051154.1 | TraY domain-containing protein | - |
| LDO74_RS20230 (NVI2019_OGMBKCAO_04067) | 31030..31392 | + | 363 | WP_036974622.1 | type IV conjugative transfer system pilin TraA | - |
| LDO74_RS20235 (NVI2019_OGMBKCAO_04068) | 31414..31719 | + | 306 | WP_036974623.1 | type IV conjugative transfer system protein TraL | - |
| LDO74_RS20240 (NVI2019_OGMBKCAO_04069) | 31734..32303 | + | 570 | WP_036974625.1 | type IV conjugative transfer system protein TraE | - |
| LDO74_RS20245 (NVI2019_OGMBKCAO_04070) | 32287..33063 | + | 777 | WP_036974626.1 | type-F conjugative transfer system secretin TraK | - |
| LDO74_RS20250 (NVI2019_OGMBKCAO_04071) | 33050..34432 | + | 1383 | WP_282563869.1 | TrbI/VirB10 family protein | - |
| LDO74_RS20255 (NVI2019_OGMBKCAO_04074) | 34639..35126 | + | 488 | Protein_32 | transcription/translation regulatory transformer protein RfaH | - |
| LDO74_RS20260 (NVI2019_OGMBKCAO_04075) | 35268..35846 | + | 579 | WP_282563884.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LDO74_RS20265 (NVI2019_OGMBKCAO_04076) | 35750..38458 | + | 2709 | WP_224051152.1 | type IV secretion system protein TraC | - |
| LDO74_RS20270 (NVI2019_OGMBKCAO_04077) | 38440..38856 | + | 417 | WP_224051151.1 | type-F conjugative transfer system protein TrbI | - |
| LDO74_RS20275 (NVI2019_OGMBKCAO_04078) | 38868..39509 | + | 642 | WP_282563868.1 | type-F conjugative transfer system protein TraW | - |
| LDO74_RS20280 (NVI2019_OGMBKCAO_04079) | 39497..40492 | + | 996 | WP_224051149.1 | conjugal transfer pilus assembly protein TraU | - |
| LDO74_RS20285 (NVI2019_OGMBKCAO_04080) | 40508..41143 | + | 636 | WP_282563867.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LDO74_RS21280 | 41809..42798 | + | 990 | Protein_39 | conjugal transfer protein TraN | - |
| LDO74_RS20295 (NVI2019_OGMBKCAO_04082) | 42984..43739 | + | 756 | WP_282490794.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| LDO74_RS20300 (NVI2019_OGMBKCAO_04083) | 43760..44050 | + | 291 | WP_224051145.1 | hypothetical protein | - |
| LDO74_RS20305 (NVI2019_OGMBKCAO_04084) | 44056..44586 | + | 531 | WP_224051144.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| LDO74_RS20310 (NVI2019_OGMBKCAO_04085) | 44689..44979 | + | 291 | WP_282563866.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| LDO74_RS20315 (NVI2019_OGMBKCAO_04086) | 44970..45248 | + | 279 | WP_036974639.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LDO74_RS21285 (NVI2019_OGMBKCAO_04087) | 45248..45391 | + | 144 | WP_282563865.1 | hypothetical protein | Antitoxin Detail |
| LDO74_RS20325 (NVI2019_OGMBKCAO_04088) | 45797..47191 | + | 1395 | WP_282563883.1 | conjugal transfer pilus assembly protein TraH | - |
| LDO74_RS20330 (NVI2019_OGMBKCAO_04089) | 47204..50098 | + | 2895 | WP_282563864.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| LDO74_RS20335 (NVI2019_OGMBKCAO_04090) | 50092..50589 | + | 498 | WP_224051141.1 | hypothetical protein | - |
| LDO74_RS20340 (NVI2019_OGMBKCAO_04091) | 50680..50886 | + | 207 | WP_224051140.1 | TraR/DksA C4-type zinc finger protein | - |
| LDO74_RS20350 (NVI2019_OGMBKCAO_04093) | 51079..51330 | + | 252 | WP_224051138.1 | hypothetical protein | - |
| LDO74_RS20355 (NVI2019_OGMBKCAO_04094) | 51393..53606 | + | 2214 | WP_224051137.1 | type IV conjugative transfer system coupling protein TraD | - |
| LDO74_RS20360 (NVI2019_OGMBKCAO_04095) | 53606..58732 | + | 5127 | WP_224051136.1 | Multifunctional conjugation protein TraI | Relaxase |
| LDO74_RS20365 (NVI2019_OGMBKCAO_04096) | 59139..60077 | + | 939 | WP_224051135.1 | RepA family replication protein | - |
| LDO74_RS20370 (NVI2019_OGMBKCAO_04097) | 60784..61356 | + | 573 | WP_282563863.1 | ProQ/FINO family protein | - |
| LDO74_RS20375 (NVI2019_OGMBKCAO_04098) | 61344..61964 | + | 621 | WP_224051133.1 | DUF2913 family protein | - |
| LDO74_RS20380 (NVI2019_OGMBKCAO_04099) | 62071..63018 | + | 948 | WP_224051132.1 | ISNCY family transposase ISPlu22 | VF |
| LDO74_RS20385 (NVI2019_OGMBKCAO_04100) | 63750..65750 | + | 2001 | WP_282563882.1 | hypothetical protein | - |
| LDO74_RS20390 (NVI2019_OGMBKCAO_04101) | 65997..66629 | - | 633 | WP_224051189.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LDO74_RS20395 (NVI2019_OGMBKCAO_04102) | 66817..67071 | + | 255 | Protein_59 | DUF1778 domain-containing protein | - |
| LDO74_RS20400 (NVI2019_OGMBKCAO_04103) | 67083..67562 | + | 480 | WP_224051187.1 | GNAT family N-acetyltransferase | - |
| LDO74_RS20405 | 67687..68022 | + | 336 | Protein_61 | CcdB family protein | - |
| LDO74_RS20410 (NVI2019_OGMBKCAO_04104) | 68419..69213 | + | 795 | WP_224051186.1 | DUF1460 domain-containing protein | - |
| LDO74_RS20420 (NVI2019_OGMBKCAO_04106) | 69805..70491 | + | 687 | WP_282565833.1 | hypothetical protein | - |
| LDO74_RS20425 (NVI2019_OGMBKCAO_04107) | 70464..72410 | + | 1947 | WP_282563880.1 | hypothetical protein | - |
| LDO74_RS20430 | 72538..72648 | - | 111 | Protein_65 | resolvase | - |
| LDO74_RS20435 | 72616..73125 | + | 510 | Protein_66 | Tn3 family transposase | - |
| LDO74_RS20440 (NVI2019_OGMBKCAO_04108) | 73415..74185 | + | 771 | WP_224051182.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| LDO74_RS20445 (NVI2019_OGMBKCAO_04109) | 74199..75143 | + | 945 | WP_224051181.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| LDO74_RS20450 (NVI2019_OGMBKCAO_04111) | 75772..76059 | - | 288 | WP_224051180.1 | hypothetical protein | - |
| LDO74_RS21290 | 76800..76922 | + | 123 | WP_263422652.1 | hypothetical protein | - |
| LDO74_RS20455 (NVI2019_OGMBKCAO_04112) | 78332..80467 | + | 2136 | WP_282565834.1 | hypothetical protein | - |
| LDO74_RS20460 (NVI2019_OGMBKCAO_04113) | 80440..82278 | + | 1839 | WP_282563878.1 | hypothetical protein | - |
| LDO74_RS20465 | 82811..83016 | + | 206 | Protein_73 | transposase | - |
| LDO74_RS20470 (NVI2019_OGMBKCAO_04114) | 83154..83633 | - | 480 | WP_224051177.1 | hypothetical protein | - |
| LDO74_RS20475 (NVI2019_OGMBKCAO_04116) | 84023..85141 | - | 1119 | WP_224051176.1 | ETX/MTX2 family pore-forming toxin | - |
| LDO74_RS20480 (NVI2019_OGMBKCAO_04117) | 85562..86119 | - | 558 | WP_224051175.1 | lysis system i-spanin subunit Rz | - |
| LDO74_RS20485 (NVI2019_OGMBKCAO_04118) | 86112..86681 | - | 570 | WP_224051174.1 | glycoside hydrolase family protein | - |
| LDO74_RS20490 (NVI2019_OGMBKCAO_04119) | 86819..87241 | - | 423 | WP_224051173.1 | Mor transcription activator family protein | - |
| LDO74_RS20495 (NVI2019_OGMBKCAO_04120) | 87514..88512 | + | 999 | WP_224051172.1 | Ig-like domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|