MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 101345 bp
Accession: NZ_LT222313 Location: 1..101345 Organism: Pseudomonas cerasi isolate Sour cherry (Prunus cerasus) symptomatic leaf Replicon: plasmid p58T1
Accession: NZ_LT222313 Location: 1..101345 Organism: Pseudomonas cerasi isolate Sour cherry (Prunus cerasus) symptomatic leaf Replicon: plasmid p58T1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCPL58_RS00010 () | 220..924 | + | 705 | WP_065348546.1 | DotI/IcmL/TraM family protein | - |
| PCPL58_RS28525 () | 968..2026 | + | 1059 | WP_083188262.1 | hypothetical protein | VF |
| PCPL58_RS00020 () | 2032..3390 | + | 1359 | WP_065348548.1 | conjugal transfer protein TraO | - |
| PCPL58_RS00025 () | 3387..4100 | + | 714 | WP_065348549.1 | conjugal transfer protein TraP | - |
| PCPL58_RS00030 () | 4109..4651 | + | 543 | WP_065348550.1 | conjugal transfer protein TraQ | - |
| PCPL58_RS00035 () | 4727..5122 | + | 396 | WP_005740383.1 | hypothetical protein | - |
| PCPL58_RS00040 () | 5166..5441 | - | 276 | WP_054072925.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PCPL58_RS00045 () | 5419..5619 | - | 201 | WP_002556012.1 | hypothetical protein | - |
| PCPL58_RS00050 () | 5804..6463 | + | 660 | WP_065348551.1 | conjugal transfer protein TraT | - |
| PCPL58_RS00055 () | 6438..9494 | + | 3057 | WP_065348552.1 | conjugal transfer protein | - |
| PCPL58_RS00060 () | 9518..9754 | + | 237 | WP_005740377.1 | hypothetical protein | - |
| PCPL58_RS00065 () | 9776..10165 | + | 390 | WP_005740376.1 | hypothetical protein | - |
| PCPL58_RS00070 () | 10177..11391 | + | 1215 | WP_002556016.1 | conjugal transfer protein TraW | - |
| PCPL58_RS00075 () | 11381..11983 | + | 603 | WP_058886769.1 | conjugal transfer protein TraX | - |
| PCPL58_RS00080 () | 12014..14158 | + | 2145 | WP_065348553.1 | DotA/TraY family protein | - |
| PCPL58_RS00085 () | 14261..14506 | + | 246 | WP_003344389.1 | hypothetical protein | - |
| PCPL58_RS00090 () | 14503..15153 | + | 651 | WP_065348554.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| PCPL58_RS00095 () | 15245..16447 | + | 1203 | WP_020325421.1 | hypothetical protein | - |
| PCPL58_RS00100 () | 16437..16814 | - | 378 | WP_065348555.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PCPL58_RS00105 () | 16811..17011 | - | 201 | WP_020309477.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PCPL58_RS00110 () | 17103..18188 | + | 1086 | WP_065348556.1 | thioredoxin fold domain-containing protein | - |
| PCPL58_RS00115 () | 18175..20382 | + | 2208 | WP_065348557.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PCPL58_RS00120 () | 20995..21660 | + | 666 | WP_065348558.1 | type III effector AvrRps4 | - |
| PCPL58_RS30385 () | 21816..21980 | + | 165 | WP_004666862.1 | hypothetical protein | - |
| PCPL58_RS00125 () | 22014..22274 | + | 261 | Protein_25 | type IV secretory system conjugative DNA transfer family protein | - |
| PCPL58_RS00130 () | 22352..22780 | + | 429 | WP_024420281.1 | GntR family transcriptional regulator | - |
| PCPL58_RS00135 () | 23191..24504 | + | 1314 | WP_065348560.1 | replication initiation protein | - |
| PCPL58_RS00140 () | 24730..25023 | + | 294 | WP_003348560.1 | HU family DNA-binding protein | - |
| PCPL58_RS28530 () | 25295..25588 | + | 294 | WP_003348565.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PCPL58_RS00150 () | 25728..26255 | + | 528 | WP_003348567.1 | hypothetical protein | - |
| PCPL58_RS00155 () | 26252..26916 | - | 665 | Protein_31 | Mobilization protein A | Relaxase |
| PCPL58_RS00160 () | 27374..28351 | - | 978 | WP_065348561.1 | IS5 family transposase ISPssy | Transposase |
| PCPL58_RS28540 () | 28716..28997 | - | 282 | Protein_33 | nucleotide-binding protein | - |
| PCPL58_RS28545 () | 29475..30995 | + | 1521 | WP_083188265.1 | RHS repeat protein | - |
| PCPL58_RS00170 () | 30992..33757 | + | 2766 | WP_065348562.1 | RHS repeat-associated core domain-containing protein | - |
| PCPL58_RS00175 () | 33754..34161 | + | 408 | WP_065348563.1 | hypothetical protein | - |
| PCPL58_RS00180 () | 34359..34763 | + | 405 | WP_065348582.1 | DUF4279 domain-containing protein | - |
| PCPL58_RS00185 () | 34870..35220 | - | 351 | WP_065348564.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PCPL58_RS00190 () | 35233..35481 | - | 249 | WP_011152898.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| PCPL58_RS00195 () | 35813..36775 | + | 963 | WP_065348565.1 | tyrosine-type recombinase/integrase | - |
| PCPL58_RS00200 () | 37174..37469 | - | 296 | Protein_41 | multicopper oxidase domain-containing protein | - |
| PCPL58_RS00205 () | 37671..38066 | - | 396 | WP_065348566.1 | DUF305 domain-containing protein | - |
| PCPL58_RS00210 () | 38398..38601 | + | 204 | WP_005782502.1 | hypothetical protein | - |
| PCPL58_RS00215 () | 38731..40608 | + | 1878 | WP_005782505.1 | copper resistance system multicopper oxidase | - |
| PCPL58_RS00220 () | 40614..41576 | + | 963 | WP_065348567.1 | copper resistance protein B | - |
| PCPL58_RS00225 () | 41674..42015 | + | 342 | Protein_46 | copper homeostasis periplasmic binding protein CopC | - |
| PCPL58_RS00230 () | 42018..42958 | + | 941 | Protein_47 | copper homeostasis membrane protein CopD | - |
| PCPL58_RS00235 () | 43047..43493 | - | 447 | WP_005782514.1 | DUF411 domain-containing protein | - |
| PCPL58_RS00240 () | 44107..45369 | + | 1263 | WP_005782515.1 | TolC family protein | - |
| PCPL58_RS00245 () | 45366..46820 | + | 1455 | WP_005782516.1 | efflux RND transporter periplasmic adaptor subunit | - |
| PCPL58_RS00250 () | 46817..49963 | + | 3147 | WP_065348568.1 | efflux RND transporter permease subunit | - |
| PCPL58_RS00255 () | 50051..50449 | - | 399 | WP_005782518.1 | Cu(I)-responsive transcriptional regulator | - |
| PCPL58_RS00260 () | 50446..52830 | - | 2385 | WP_065348569.1 | heavy metal translocating P-type ATPase | - |
| PCPL58_RS00265 () | 52988..53185 | + | 198 | WP_005782520.1 | heavy-metal-associated domain-containing protein | - |
| PCPL58_RS00270 () | 53416..54102 | + | 687 | WP_005782521.1 | Transcriptional activator protein CopR | VF |
| PCPL58_RS00275 () | 54099..55420 | + | 1322 | Protein_56 | heavy metal sensor histidine kinase | - |
| PCPL58_RS28550 () | 55546..55872 | - | 327 | WP_083188266.1 | four-helix bundle copper-binding protein | - |
| PCPL58_RS00280 () | 56173..56635 | - | 463 | Protein_58 | DUF411 domain-containing protein | - |
| PCPL58_RS00285 () | 56671..57227 | - | 557 | Protein_59 | N-acetyltransferase | - |
| PCPL58_RS00290 () | 57256..57991 | - | 736 | Protein_60 | arsenical resistance protein ArsH | - |
| PCPL58_RS00295 () | 57991..58463 | - | 473 | Protein_61 | arsenate reductase ArsC | - |
| PCPL58_RS00300 () | 58534..58886 | - | 353 | Protein_62 | metalloregulator ArsR/SmtB family transcription factor | - |
| PCPL58_RS00305 () | 59083..59358 | + | 276 | WP_065348571.1 | metal/formaldehyde-sensitive transcriptional repressor | - |
| PCPL58_RS00310 () | 59379..60290 | + | 912 | WP_065348572.1 | CDF family Co(II)/Ni(II) efflux transporter DmeF | - |
| PCPL58_RS00315 () | 60710..61672 | + | 963 | WP_065348573.1 | IS91 family transposase ISTha3 | Transposase |
| PCPL58_RS00320 () | 61698..62012 | - | 315 | WP_065348583.1 | hypothetical protein | - |
| PCPL58_RS00325 () | 62536..63321 | + | 786 | Protein_67 | IS66 family transposase ISPsy43 | VF |
| PCPL58_RS00330 () | 63760..65334 | + | 1575 | WP_065348574.1 | diguanylate cyclase | - |
| PCPL58_RS00335 () | 65406..65534 | + | 129 | Protein_69 | IS256 family transposase ISPsy17 | Transposase |
| PCPL58_RS00340 () | 65716..66945 | - | 1230 | WP_065348575.1 | IS91 family transposase IS801 | Transposase |
| PCPL58_RS00345 () | 67157..67966 | - | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| PCPL58_RS00350 () | 67963..68985 | - | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| PCPL58_RS00355 () | 69547..71577 | - | 2031 | WP_065348576.1 | IS66 family transposase ISPsy43 | VF |
| PCPL58_RS00360 () | 72564..73649 | - | 1086 | WP_002556026.1 | DUF3616 domain-containing protein | - |
| PCPL58_RS00365 () | 73800..74021 | + | 222 | WP_004666801.1 | hypothetical protein | - |
| PCPL58_RS28560 () | 74585..75603 | - | 1019 | Protein_76 | tyrosine protein phosphatase | - |
| PCPL58_RS00380 () | 75976..76284 | + | 309 | WP_181135240.1 | DUF4113 domain-containing protein | - |
| PCPL58_RS00385 () | 76359..76643 | - | 285 | WP_003407168.1 | putative addiction module antidote protein | Antitoxin Detail |
| PCPL58_RS00390 () | 76640..76939 | - | 300 | WP_044322659.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PCPL58_RS00395 () | 77449..77865 | + | 417 | WP_044322716.1 | hypothetical protein | - |
| PCPL58_RS30395 () | 77874..78107 | - | 234 | WP_134931282.1 | hypothetical protein | - |
| PCPL58_RS00405 () | 78261..78914 | + | 654 | WP_044322644.1 | AAA family ATPase | - |
| PCPL58_RS00410 () | 79003..79254 | + | 252 | WP_003348789.1 | ribbon-helix-helix protein, CopG family | - |
| PCPL58_RS00415 () | 79518..80135 | + | 618 | WP_065348578.1 | SOS response-associated peptidase | - |
| PCPL58_RS28570 () | 80326..81004 | + | 679 | Protein_85 | tyrosine-type recombinase/integrase | - |
| PCPL58_RS00425 () | 81067..81876 | - | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| PCPL58_RS00430 () | 81873..82895 | - | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| PCPL58_RS00435 () | 83168..83797 | + | 630 | WP_004666923.1 | AAA family ATPase | - |
| PCPL58_RS00440 () | 83818..84036 | + | 219 | WP_004666922.1 | chromosome partitioning protein ParB | - |
| PCPL58_RS00445 () | 84382..84783 | + | 402 | WP_057443138.1 | S24 family peptidase | - |
| PCPL58_RS00450 () | 85259..85687 | + | 429 | WP_005783154.1 | CesT family type III secretion system chaperone | - |
| PCPL58_RS00455 () | 86048..86791 | + | 744 | WP_162273801.1 | type III effector | - |
| PCPL58_RS00460 () | 86797..87936 | + | 1140 | WP_060402230.1 | hypothetical protein | - |
| PCPL58_RS00465 () | 88145..88312 | - | 168 | Protein_94 | IS91 family transposase | - |
| PCPL58_RS00470 () | 88832..89452 | - | 621 | WP_005747119.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PCPL58_RS00475 () | 89960..90769 | - | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| PCPL58_RS00480 () | 90766..91788 | - | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| PCPL58_RS28575 () | 91843..92127 | - | 285 | WP_083188269.1 | type II toxin-antitoxin system YafQ family toxin | - |
| PCPL58_RS00490 () | 92054..92383 | - | 330 | WP_003381772.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| PCPL58_RS00500 () | 93906..95138 | - | 1233 | WP_083188273.1 | IS91 family transposase IS801 | Transposase |
| PCPL58_RS00505 () | 95287..95535 | + | 249 | WP_053486299.1 | hypothetical protein | - |
| PCPL58_RS00510 () | 95615..96112 | + | 498 | WP_054998780.1 | Cardiolipin synthase B | VF |
| PCPL58_RS00515 () | 96149..96394 | + | 246 | WP_004666892.1 | hypothetical protein | - |
| PCPL58_RS00520 () | 96423..96704 | + | 282 | WP_010208375.1 | IcmT/TraK family protein | - |
| PCPL58_RS00525 () | 96708..101189 | + | 4482 | WP_065348580.1 | DNA primase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|